Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00885 and BPHYT_RS00890 are separated by 724 nucleotides BPHYT_RS00890 and BPHYT_RS00895 are separated by 236 nucleotides
BPHYT_RS00885: BPHYT_RS00885 - chemotaxis protein CheY, at 202,322 to 203,386
_RS00885
BPHYT_RS00890: BPHYT_RS00890 - membrane protein, at 204,111 to 205,199
_RS00890
BPHYT_RS00895: BPHYT_RS00895 - MFS transporter, at 205,436 to 206,818
_RS00895
Position (kb) 204
205
206 Strain fitness (log2 ratio) -2
-1
0
1
2 at 203.234 kb on + strand, within BPHYT_RS00885 at 203.270 kb on + strand, within BPHYT_RS00885 at 203.341 kb on + strand at 203.364 kb on - strand at 203.705 kb on + strand at 203.705 kb on + strand at 203.706 kb on - strand at 203.728 kb on + strand at 203.793 kb on - strand at 203.858 kb on - strand at 203.870 kb on + strand at 203.871 kb on - strand at 203.872 kb on + strand at 203.994 kb on - strand at 203.994 kb on - strand at 204.054 kb on + strand at 204.054 kb on + strand at 204.055 kb on - strand at 204.055 kb on - strand at 204.157 kb on + strand at 204.227 kb on - strand, within BPHYT_RS00890 at 204.268 kb on + strand, within BPHYT_RS00890 at 204.374 kb on - strand, within BPHYT_RS00890 at 204.436 kb on + strand, within BPHYT_RS00890 at 204.586 kb on + strand, within BPHYT_RS00890 at 204.620 kb on - strand, within BPHYT_RS00890 at 204.647 kb on - strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.655 kb on - strand, within BPHYT_RS00890 at 204.655 kb on - strand, within BPHYT_RS00890 at 204.655 kb on - strand, within BPHYT_RS00890 at 204.683 kb on - strand, within BPHYT_RS00890 at 204.794 kb on - strand, within BPHYT_RS00890 at 204.810 kb on + strand, within BPHYT_RS00890 at 204.991 kb on - strand, within BPHYT_RS00890 at 205.023 kb on - strand, within BPHYT_RS00890 at 205.247 kb on + strand at 205.675 kb on + strand, within BPHYT_RS00895 at 205.717 kb on - strand, within BPHYT_RS00895 at 205.747 kb on - strand, within BPHYT_RS00895 at 205.759 kb on + strand, within BPHYT_RS00895 at 205.935 kb on + strand, within BPHYT_RS00895 at 206.014 kb on - strand, within BPHYT_RS00895 at 206.193 kb on + strand, within BPHYT_RS00895 at 206.193 kb on + strand, within BPHYT_RS00895
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 203,234 + BPHYT_RS00885 0.86 -1.9 203,270 + BPHYT_RS00885 0.89 -0.3 203,341 + +0.2 203,364 - +0.2 203,705 + -0.3 203,705 + +0.3 203,706 - +0.0 203,728 + +1.1 203,793 - +0.1 203,858 - +0.0 203,870 + +0.6 203,871 - -1.2 203,872 + -0.5 203,994 - -0.4 203,994 - +1.0 204,054 + -1.5 204,054 + +0.0 204,055 - -1.5 204,055 - +1.8 204,157 + -0.4 204,227 - BPHYT_RS00890 0.11 +0.1 204,268 + BPHYT_RS00890 0.14 -1.1 204,374 - BPHYT_RS00890 0.24 +1.5 204,436 + BPHYT_RS00890 0.30 +0.0 204,586 + BPHYT_RS00890 0.44 +0.6 204,620 - BPHYT_RS00890 0.47 -0.1 204,647 - BPHYT_RS00890 0.49 -0.5 204,654 + BPHYT_RS00890 0.50 +1.3 204,654 + BPHYT_RS00890 0.50 +0.4 204,654 + BPHYT_RS00890 0.50 -0.0 204,654 + BPHYT_RS00890 0.50 +0.8 204,655 - BPHYT_RS00890 0.50 -0.1 204,655 - BPHYT_RS00890 0.50 -0.3 204,655 - BPHYT_RS00890 0.50 +0.1 204,683 - BPHYT_RS00890 0.53 -1.8 204,794 - BPHYT_RS00890 0.63 +1.4 204,810 + BPHYT_RS00890 0.64 -2.1 204,991 - BPHYT_RS00890 0.81 +0.0 205,023 - BPHYT_RS00890 0.84 -0.7 205,247 + -0.4 205,675 + BPHYT_RS00895 0.17 +0.2 205,717 - BPHYT_RS00895 0.20 +0.7 205,747 - BPHYT_RS00895 0.22 +0.7 205,759 + BPHYT_RS00895 0.23 -1.5 205,935 + BPHYT_RS00895 0.36 -1.4 206,014 - BPHYT_RS00895 0.42 -0.0 206,193 + BPHYT_RS00895 0.55 -0.8 206,193 + BPHYT_RS00895 0.55 +1.5
Or see this region's nucleotide sequence