Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36460 and BPHYT_RS36465 are separated by 58 nucleotides BPHYT_RS36465 and BPHYT_RS36470 are separated by 252 nucleotides BPHYT_RS36470 and BPHYT_RS36475 are separated by 431 nucleotides
BPHYT_RS36460: BPHYT_RS36460 - hypothetical protein, at 102,791 to 103,294
_RS36460
BPHYT_RS36465: BPHYT_RS36465 - DNA-binding protein, at 103,353 to 103,673
_RS36465
BPHYT_RS36470: BPHYT_RS36470 - hypothetical protein, at 103,926 to 104,846
_RS36470
BPHYT_RS36475: BPHYT_RS36475 - hypothetical protein, at 105,278 to 105,775
_RS36475
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1
2 at 103.020 kb on - strand, within BPHYT_RS36460 at 103.023 kb on - strand, within BPHYT_RS36460 at 103.261 kb on - strand at 103.261 kb on - strand at 103.293 kb on - strand at 103.322 kb on - strand at 103.482 kb on + strand, within BPHYT_RS36465 at 103.749 kb on + strand at 103.749 kb on + strand at 103.750 kb on - strand at 103.939 kb on + strand at 103.939 kb on - strand at 103.939 kb on - strand at 103.989 kb on + strand at 104.014 kb on - strand at 104.081 kb on + strand, within BPHYT_RS36470 at 104.082 kb on - strand, within BPHYT_RS36470 at 104.986 kb on + strand at 105.113 kb on - strand at 105.210 kb on + strand at 105.213 kb on + strand at 105.279 kb on - strand at 105.368 kb on - strand, within BPHYT_RS36475 at 105.462 kb on - strand, within BPHYT_RS36475 at 105.617 kb on + strand, within BPHYT_RS36475 at 105.618 kb on - strand, within BPHYT_RS36475
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 103,020 - BPHYT_RS36460 0.45 +0.7 103,023 - BPHYT_RS36460 0.46 +0.1 103,261 - -1.1 103,261 - +1.3 103,293 - +0.2 103,322 - -0.2 103,482 + BPHYT_RS36465 0.40 +0.3 103,749 + +0.4 103,749 + +0.4 103,750 - -1.3 103,939 + +1.3 103,939 - -0.1 103,939 - +0.3 103,989 + -1.1 104,014 - -0.3 104,081 + BPHYT_RS36470 0.17 -0.1 104,082 - BPHYT_RS36470 0.17 -0.2 104,986 + +0.2 105,113 - -0.0 105,210 + -0.1 105,213 + -0.7 105,279 - +1.8 105,368 - BPHYT_RS36475 0.18 -0.6 105,462 - BPHYT_RS36475 0.37 -0.1 105,617 + BPHYT_RS36475 0.68 -2.1 105,618 - BPHYT_RS36475 0.68 +0.0
Or see this region's nucleotide sequence