Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35440 and BPHYT_RS35445 are separated by 29 nucleotides BPHYT_RS35445 and BPHYT_RS35450 are separated by 71 nucleotides BPHYT_RS35450 and BPHYT_RS35455 overlap by 4 nucleotides BPHYT_RS35455 and BPHYT_RS35460 overlap by 4 nucleotides
BPHYT_RS35440: BPHYT_RS35440 - carboxymethylenebutenolidase, at 3,552,328 to 3,553,551
_RS35440
BPHYT_RS35445: BPHYT_RS35445 - 2-aminobenzoate-CoA ligase [EC: 6.2.1.32] <small>(from data)</small>, at 3,553,581 to 3,555,221
_RS35445
BPHYT_RS35450: BPHYT_RS35450 - endoribonuclease L-PSP, at 3,555,293 to 3,555,688
_RS35450
BPHYT_RS35455: BPHYT_RS35455 - 4-hydroxybenzoyl-CoA thioesterase, at 3,555,685 to 3,556,128
_RS35455
BPHYT_RS35460: BPHYT_RS35460 - acyl-CoA dehydrogenase, at 3,556,125 to 3,557,333
_RS35460
Position (kb) 3553
3554
3555
3556 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 3552.585 kb on + strand, within BPHYT_RS35440 at 3552.586 kb on - strand, within BPHYT_RS35440 at 3552.592 kb on - strand, within BPHYT_RS35440 at 3552.661 kb on - strand, within BPHYT_RS35440 at 3552.755 kb on + strand, within BPHYT_RS35440 at 3552.756 kb on - strand, within BPHYT_RS35440 at 3552.848 kb on + strand, within BPHYT_RS35440 at 3552.848 kb on + strand, within BPHYT_RS35440 at 3552.894 kb on - strand, within BPHYT_RS35440 at 3552.921 kb on - strand, within BPHYT_RS35440 at 3553.385 kb on + strand, within BPHYT_RS35440 at 3553.582 kb on + strand at 3553.671 kb on - strand at 3554.472 kb on - strand, within BPHYT_RS35445 at 3554.505 kb on + strand, within BPHYT_RS35445 at 3554.505 kb on + strand, within BPHYT_RS35445 at 3554.506 kb on - strand, within BPHYT_RS35445 at 3554.506 kb on - strand, within BPHYT_RS35445 at 3554.506 kb on - strand, within BPHYT_RS35445 at 3554.903 kb on + strand, within BPHYT_RS35445 at 3555.459 kb on + strand, within BPHYT_RS35450 at 3555.886 kb on - strand, within BPHYT_RS35455
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 3,552,585 + BPHYT_RS35440 0.21 -0.2 3,552,586 - BPHYT_RS35440 0.21 +0.2 3,552,592 - BPHYT_RS35440 0.22 -0.5 3,552,661 - BPHYT_RS35440 0.27 -0.2 3,552,755 + BPHYT_RS35440 0.35 -0.1 3,552,756 - BPHYT_RS35440 0.35 -0.3 3,552,848 + BPHYT_RS35440 0.42 +0.2 3,552,848 + BPHYT_RS35440 0.42 -1.6 3,552,894 - BPHYT_RS35440 0.46 -1.2 3,552,921 - BPHYT_RS35440 0.48 +1.7 3,553,385 + BPHYT_RS35440 0.86 +4.1 3,553,582 + +0.8 3,553,671 - +0.8 3,554,472 - BPHYT_RS35445 0.54 +1.5 3,554,505 + BPHYT_RS35445 0.56 +1.4 3,554,505 + BPHYT_RS35445 0.56 -0.0 3,554,506 - BPHYT_RS35445 0.56 -0.5 3,554,506 - BPHYT_RS35445 0.56 +0.9 3,554,506 - BPHYT_RS35445 0.56 +0.5 3,554,903 + BPHYT_RS35445 0.81 +0.5 3,555,459 + BPHYT_RS35450 0.42 +0.1 3,555,886 - BPHYT_RS35455 0.45 -0.1
Or see this region's nucleotide sequence