Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23155

Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23150 and BPHYT_RS23155 are separated by 73 nucleotidesBPHYT_RS23155 and BPHYT_RS23160 are separated by 28 nucleotides BPHYT_RS23150: BPHYT_RS23150 - ABC transporter substrate-binding protein, at 759,437 to 760,558 _RS23150 BPHYT_RS23155: BPHYT_RS23155 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data), at 760,632 to 762,080 _RS23155 BPHYT_RS23160: BPHYT_RS23160 - Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data), at 762,109 to 763,443 _RS23160 Position (kb) 760 761 762 763Strain fitness (log2 ratio) -1 0 1 2at 761.248 kb on + strand, within BPHYT_RS23155at 762.734 kb on + strand, within BPHYT_RS23160at 762.734 kb on + strand, within BPHYT_RS23160at 762.948 kb on - strand, within BPHYT_RS23160

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
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761,248 + BPHYT_RS23155 0.43 +1.0
762,734 + BPHYT_RS23160 0.47 +1.5
762,734 + BPHYT_RS23160 0.47 +0.2
762,948 - BPHYT_RS23160 0.63 +2.3

Or see this region's nucleotide sequence