Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22385 and BPHYT_RS22390 are separated by 41 nucleotides BPHYT_RS22390 and BPHYT_RS22395 are separated by 347 nucleotides
BPHYT_RS22385: BPHYT_RS22385 - hypothetical protein, at 578,213 to 579,142
_RS22385
BPHYT_RS22390: BPHYT_RS22390 - glycine/betaine ABC transporter substrate-binding protein, at 579,184 to 580,149
_RS22390
BPHYT_RS22395: BPHYT_RS22395 - AraC family transcriptional regulator, at 580,497 to 581,450
_RS22395
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 578.221 kb on - strand at 578.718 kb on + strand, within BPHYT_RS22385 at 578.719 kb on - strand, within BPHYT_RS22385 at 578.719 kb on - strand, within BPHYT_RS22385 at 578.719 kb on - strand, within BPHYT_RS22385 at 578.724 kb on + strand, within BPHYT_RS22385 at 578.725 kb on - strand, within BPHYT_RS22385 at 578.949 kb on + strand, within BPHYT_RS22385 at 578.950 kb on - strand, within BPHYT_RS22385 at 579.430 kb on - strand, within BPHYT_RS22390 at 579.430 kb on - strand, within BPHYT_RS22390 at 579.485 kb on + strand, within BPHYT_RS22390 at 579.485 kb on + strand, within BPHYT_RS22390 at 579.689 kb on + strand, within BPHYT_RS22390 at 579.762 kb on - strand, within BPHYT_RS22390 at 579.802 kb on - strand, within BPHYT_RS22390 at 580.282 kb on - strand at 580.391 kb on + strand at 580.391 kb on + strand at 580.508 kb on + strand at 580.508 kb on + strand at 580.743 kb on + strand, within BPHYT_RS22395 at 580.743 kb on + strand, within BPHYT_RS22395 at 580.958 kb on + strand, within BPHYT_RS22395
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 578,221 - -0.1 578,718 + BPHYT_RS22385 0.54 -1.0 578,719 - BPHYT_RS22385 0.54 +0.1 578,719 - BPHYT_RS22385 0.54 +0.5 578,719 - BPHYT_RS22385 0.54 +0.7 578,724 + BPHYT_RS22385 0.55 +0.2 578,725 - BPHYT_RS22385 0.55 -0.1 578,949 + BPHYT_RS22385 0.79 -0.4 578,950 - BPHYT_RS22385 0.79 -0.8 579,430 - BPHYT_RS22390 0.25 +5.2 579,430 - BPHYT_RS22390 0.25 +0.0 579,485 + BPHYT_RS22390 0.31 +1.2 579,485 + BPHYT_RS22390 0.31 -0.2 579,689 + BPHYT_RS22390 0.52 -0.7 579,762 - BPHYT_RS22390 0.60 -0.5 579,802 - BPHYT_RS22390 0.64 -0.5 580,282 - -1.8 580,391 + -0.2 580,391 + -0.7 580,508 + -0.2 580,508 + -0.4 580,743 + BPHYT_RS22395 0.26 +0.7 580,743 + BPHYT_RS22395 0.26 -3.1 580,958 + BPHYT_RS22395 0.48 +0.1
Or see this region's nucleotide sequence