Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19620 and BPHYT_RS19625 are separated by 1 nucleotides BPHYT_RS19625 and BPHYT_RS19630 overlap by 23 nucleotides BPHYT_RS19630 and BPHYT_RS19635 are separated by 481 nucleotides
BPHYT_RS19620: BPHYT_RS19620 - general secretion pathway protein GspH, at 4,415,924 to 4,416,415
_RS19620
BPHYT_RS19625: BPHYT_RS19625 - general secretion pathway protein I, at 4,416,417 to 4,416,833
_RS19625
BPHYT_RS19630: BPHYT_RS19630 - general secretion pathway protein J, at 4,416,811 to 4,417,497
_RS19630
BPHYT_RS19635: BPHYT_RS19635 - general secretion pathway protein K, at 4,417,979 to 4,419,274
_RS19635
Position (kb) 4416
4417
4418 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 4415.833 kb on + strand at 4415.833 kb on + strand at 4415.834 kb on - strand at 4416.209 kb on - strand, within BPHYT_RS19620 at 4416.309 kb on + strand, within BPHYT_RS19620 at 4416.310 kb on - strand, within BPHYT_RS19620 at 4416.310 kb on - strand, within BPHYT_RS19620 at 4416.611 kb on + strand, within BPHYT_RS19625 at 4416.611 kb on + strand, within BPHYT_RS19625 at 4416.612 kb on - strand, within BPHYT_RS19625 at 4417.156 kb on + strand, within BPHYT_RS19630 at 4417.290 kb on + strand, within BPHYT_RS19630 at 4417.291 kb on - strand, within BPHYT_RS19630 at 4417.306 kb on + strand, within BPHYT_RS19630 at 4417.306 kb on + strand, within BPHYT_RS19630 at 4417.375 kb on - strand, within BPHYT_RS19630 at 4417.498 kb on + strand at 4417.499 kb on - strand at 4417.583 kb on - strand at 4417.583 kb on - strand at 4417.583 kb on - strand at 4417.583 kb on - strand at 4417.614 kb on - strand at 4417.639 kb on + strand at 4417.639 kb on + strand at 4417.667 kb on - strand at 4417.671 kb on + strand at 4417.671 kb on + strand at 4417.671 kb on + strand at 4417.672 kb on - strand at 4417.838 kb on + strand at 4417.838 kb on + strand at 4417.838 kb on + strand at 4417.943 kb on - strand at 4417.979 kb on - strand at 4417.979 kb on - strand at 4417.979 kb on - strand at 4417.979 kb on - strand at 4418.077 kb on - strand at 4418.077 kb on - strand at 4418.096 kb on - strand at 4418.121 kb on + strand, within BPHYT_RS19635 at 4418.149 kb on + strand, within BPHYT_RS19635 at 4418.152 kb on + strand, within BPHYT_RS19635 at 4418.152 kb on + strand, within BPHYT_RS19635 at 4418.152 kb on + strand, within BPHYT_RS19635 at 4418.233 kb on - strand, within BPHYT_RS19635 at 4418.233 kb on - strand, within BPHYT_RS19635 at 4418.233 kb on - strand, within BPHYT_RS19635 at 4418.244 kb on + strand, within BPHYT_RS19635 at 4418.244 kb on + strand, within BPHYT_RS19635 at 4418.244 kb on + strand, within BPHYT_RS19635 at 4418.247 kb on + strand, within BPHYT_RS19635 at 4418.247 kb on + strand, within BPHYT_RS19635 at 4418.247 kb on + strand, within BPHYT_RS19635 at 4418.247 kb on + strand, within BPHYT_RS19635 at 4418.248 kb on - strand, within BPHYT_RS19635 at 4418.248 kb on - strand, within BPHYT_RS19635 at 4418.248 kb on - strand, within BPHYT_RS19635 at 4418.250 kb on + strand, within BPHYT_RS19635 at 4418.251 kb on - strand, within BPHYT_RS19635 at 4418.423 kb on + strand, within BPHYT_RS19635 at 4418.423 kb on + strand, within BPHYT_RS19635 at 4418.437 kb on - strand, within BPHYT_RS19635 at 4418.497 kb on - strand, within BPHYT_RS19635 at 4418.497 kb on - strand, within BPHYT_RS19635
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 4,415,833 + +1.8 4,415,833 + -0.2 4,415,834 - +0.0 4,416,209 - BPHYT_RS19620 0.58 -0.5 4,416,309 + BPHYT_RS19620 0.78 -0.6 4,416,310 - BPHYT_RS19620 0.78 -0.4 4,416,310 - BPHYT_RS19620 0.78 +1.7 4,416,611 + BPHYT_RS19625 0.47 -0.9 4,416,611 + BPHYT_RS19625 0.47 +0.4 4,416,612 - BPHYT_RS19625 0.47 +0.3 4,417,156 + BPHYT_RS19630 0.50 +1.6 4,417,290 + BPHYT_RS19630 0.70 -0.2 4,417,291 - BPHYT_RS19630 0.70 +0.3 4,417,306 + BPHYT_RS19630 0.72 +0.3 4,417,306 + BPHYT_RS19630 0.72 +0.4 4,417,375 - BPHYT_RS19630 0.82 -1.4 4,417,498 + -0.1 4,417,499 - -0.1 4,417,583 - +0.8 4,417,583 - +0.2 4,417,583 - +0.4 4,417,583 - +1.1 4,417,614 - +0.1 4,417,639 + -0.9 4,417,639 + +0.2 4,417,667 - +2.9 4,417,671 + -0.1 4,417,671 + +0.2 4,417,671 + -0.3 4,417,672 - -0.4 4,417,838 + -2.2 4,417,838 + +1.1 4,417,838 + +0.9 4,417,943 - +5.6 4,417,979 - +0.7 4,417,979 - -1.1 4,417,979 - +0.4 4,417,979 - -0.1 4,418,077 - -0.3 4,418,077 - -0.1 4,418,096 - +2.4 4,418,121 + BPHYT_RS19635 0.11 +0.2 4,418,149 + BPHYT_RS19635 0.13 +0.9 4,418,152 + BPHYT_RS19635 0.13 +0.9 4,418,152 + BPHYT_RS19635 0.13 +0.5 4,418,152 + BPHYT_RS19635 0.13 +0.7 4,418,233 - BPHYT_RS19635 0.20 -2.7 4,418,233 - BPHYT_RS19635 0.20 -1.1 4,418,233 - BPHYT_RS19635 0.20 +4.2 4,418,244 + BPHYT_RS19635 0.20 +2.2 4,418,244 + BPHYT_RS19635 0.20 +0.6 4,418,244 + BPHYT_RS19635 0.20 -0.4 4,418,247 + BPHYT_RS19635 0.21 -0.6 4,418,247 + BPHYT_RS19635 0.21 +0.8 4,418,247 + BPHYT_RS19635 0.21 -0.5 4,418,247 + BPHYT_RS19635 0.21 -2.0 4,418,248 - BPHYT_RS19635 0.21 +2.0 4,418,248 - BPHYT_RS19635 0.21 -1.6 4,418,248 - BPHYT_RS19635 0.21 +0.4 4,418,250 + BPHYT_RS19635 0.21 -1.6 4,418,251 - BPHYT_RS19635 0.21 +2.1 4,418,423 + BPHYT_RS19635 0.34 +0.5 4,418,423 + BPHYT_RS19635 0.34 -0.5 4,418,437 - BPHYT_RS19635 0.35 +2.9 4,418,497 - BPHYT_RS19635 0.40 -0.5 4,418,497 - BPHYT_RS19635 0.40 -0.3
Or see this region's nucleotide sequence