Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16935 and BPHYT_RS16940 are separated by 130 nucleotides BPHYT_RS16940 and BPHYT_RS16945 overlap by 4 nucleotides BPHYT_RS16945 and BPHYT_RS16950 are separated by 36 nucleotides
BPHYT_RS16935: BPHYT_RS16935 - D-galactose ABC transporter, substrate-binding component <small>(from data)</small>, at 3,840,428 to 3,841,426
_RS16935
BPHYT_RS16940: BPHYT_RS16940 - short-chain dehydrogenase, at 3,841,557 to 3,842,333
_RS16940
BPHYT_RS16945: BPHYT_RS16945 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 3,842,330 to 3,843,010
_RS16945
BPHYT_RS16950: BPHYT_RS16950 - 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) <small>(from data)</small>, at 3,843,047 to 3,844,099
_RS16950
Position (kb) 3842
3843
3844 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3841.444 kb on + strand at 3841.445 kb on - strand at 3841.445 kb on - strand at 3841.445 kb on - strand at 3841.520 kb on + strand at 3841.771 kb on + strand, within BPHYT_RS16940 at 3841.772 kb on - strand, within BPHYT_RS16940 at 3841.813 kb on + strand, within BPHYT_RS16940 at 3842.073 kb on + strand, within BPHYT_RS16940 at 3842.073 kb on + strand, within BPHYT_RS16940 at 3842.073 kb on + strand, within BPHYT_RS16940 at 3842.073 kb on + strand, within BPHYT_RS16940 at 3842.074 kb on - strand, within BPHYT_RS16940 at 3842.373 kb on + strand at 3842.374 kb on - strand at 3842.419 kb on + strand, within BPHYT_RS16945 at 3842.421 kb on + strand, within BPHYT_RS16945 at 3842.421 kb on + strand, within BPHYT_RS16945 at 3842.422 kb on - strand, within BPHYT_RS16945 at 3842.422 kb on - strand at 3842.492 kb on - strand, within BPHYT_RS16945 at 3842.979 kb on + strand at 3842.979 kb on + strand at 3842.980 kb on - strand at 3843.301 kb on - strand, within BPHYT_RS16950 at 3843.301 kb on - strand, within BPHYT_RS16950 at 3843.301 kb on - strand, within BPHYT_RS16950 at 3843.492 kb on - strand, within BPHYT_RS16950 at 3843.512 kb on - strand, within BPHYT_RS16950
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 3,841,444 + +0.0 3,841,445 - -1.1 3,841,445 - -0.5 3,841,445 - -0.4 3,841,520 + +0.6 3,841,771 + BPHYT_RS16940 0.28 -0.6 3,841,772 - BPHYT_RS16940 0.28 -1.7 3,841,813 + BPHYT_RS16940 0.33 +0.4 3,842,073 + BPHYT_RS16940 0.66 -0.3 3,842,073 + BPHYT_RS16940 0.66 +1.1 3,842,073 + BPHYT_RS16940 0.66 -0.3 3,842,073 + BPHYT_RS16940 0.66 -0.3 3,842,074 - BPHYT_RS16940 0.67 +1.2 3,842,373 + -0.4 3,842,374 - -0.3 3,842,419 + BPHYT_RS16945 0.13 -0.4 3,842,421 + BPHYT_RS16945 0.13 -0.3 3,842,421 + BPHYT_RS16945 0.13 -0.6 3,842,422 - BPHYT_RS16945 0.14 -3.0 3,842,422 - +1.2 3,842,492 - BPHYT_RS16945 0.24 -2.0 3,842,979 + -0.4 3,842,979 + -1.6 3,842,980 - -1.0 3,843,301 - BPHYT_RS16950 0.24 -1.1 3,843,301 - BPHYT_RS16950 0.24 -0.3 3,843,301 - BPHYT_RS16950 0.24 -1.8 3,843,492 - BPHYT_RS16950 0.42 -0.1 3,843,512 - BPHYT_RS16950 0.44 -0.2
Or see this region's nucleotide sequence