Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04160 and BPHYT_RS04165 are separated by 217 nucleotides BPHYT_RS04165 and BPHYT_RS04170 are separated by 38 nucleotides BPHYT_RS04170 and BPHYT_RS04175 are separated by 309 nucleotides
BPHYT_RS04160: BPHYT_RS04160 - glycosyl transferase family 1, at 954,930 to 956,150
_RS04160
BPHYT_RS04165: BPHYT_RS04165 - hypothetical protein, at 956,368 to 956,772
_RS04165
BPHYT_RS04170: BPHYT_RS04170 - hypothetical protein, at 956,811 to 957,092
_RS04170
BPHYT_RS04175: BPHYT_RS04175 - hypothetical protein, at 957,402 to 958,118
_RS04175
Position (kb) 956
957 Strain fitness (log2 ratio) -1
0
1
2 at 955.407 kb on + strand, within BPHYT_RS04160 at 955.477 kb on - strand, within BPHYT_RS04160 at 955.477 kb on - strand, within BPHYT_RS04160 at 955.477 kb on - strand, within BPHYT_RS04160 at 955.478 kb on + strand, within BPHYT_RS04160 at 956.049 kb on + strand at 956.064 kb on + strand at 956.169 kb on + strand at 956.191 kb on + strand at 956.191 kb on + strand at 956.192 kb on - strand at 956.192 kb on - strand at 956.240 kb on - strand at 956.287 kb on + strand at 956.405 kb on - strand at 956.527 kb on + strand, within BPHYT_RS04165 at 956.527 kb on + strand, within BPHYT_RS04165 at 956.619 kb on + strand, within BPHYT_RS04165 at 956.772 kb on + strand at 956.772 kb on + strand at 956.772 kb on + strand at 956.800 kb on - strand at 956.872 kb on - strand, within BPHYT_RS04170 at 956.968 kb on + strand, within BPHYT_RS04170 at 956.969 kb on - strand, within BPHYT_RS04170 at 957.104 kb on + strand at 957.249 kb on + strand at 957.352 kb on - strand at 957.508 kb on + strand, within BPHYT_RS04175 at 957.508 kb on + strand, within BPHYT_RS04175 at 957.508 kb on + strand, within BPHYT_RS04175 at 957.509 kb on - strand, within BPHYT_RS04175 at 957.601 kb on + strand, within BPHYT_RS04175 at 957.669 kb on - strand, within BPHYT_RS04175 at 957.669 kb on - strand, within BPHYT_RS04175 at 957.697 kb on + strand, within BPHYT_RS04175 at 957.697 kb on + strand, within BPHYT_RS04175
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 955,407 + BPHYT_RS04160 0.39 +1.3 955,477 - BPHYT_RS04160 0.45 -0.3 955,477 - BPHYT_RS04160 0.45 -0.2 955,477 - BPHYT_RS04160 0.45 -1.4 955,478 + BPHYT_RS04160 0.45 -0.6 956,049 + -0.4 956,064 + -0.2 956,169 + -0.1 956,191 + -1.1 956,191 + -0.6 956,192 - -0.3 956,192 - -0.1 956,240 - -1.1 956,287 + +1.4 956,405 - +0.1 956,527 + BPHYT_RS04165 0.39 -0.9 956,527 + BPHYT_RS04165 0.39 +0.2 956,619 + BPHYT_RS04165 0.62 -1.2 956,772 + -0.4 956,772 + -0.1 956,772 + +1.2 956,800 - +0.7 956,872 - BPHYT_RS04170 0.22 -0.5 956,968 + BPHYT_RS04170 0.56 +0.4 956,969 - BPHYT_RS04170 0.56 +2.5 957,104 + -0.3 957,249 + +0.4 957,352 - +0.2 957,508 + BPHYT_RS04175 0.15 -1.6 957,508 + BPHYT_RS04175 0.15 -1.1 957,508 + BPHYT_RS04175 0.15 -0.3 957,509 - BPHYT_RS04175 0.15 -0.0 957,601 + BPHYT_RS04175 0.28 -0.2 957,669 - BPHYT_RS04175 0.37 +1.2 957,669 - BPHYT_RS04175 0.37 +0.5 957,697 + BPHYT_RS04175 0.41 -0.2 957,697 + BPHYT_RS04175 0.41 -0.1
Or see this region's nucleotide sequence