Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03660 and BPHYT_RS03665 are separated by 233 nucleotides BPHYT_RS03665 and BPHYT_RS03670 are separated by 490 nucleotides
BPHYT_RS03660: BPHYT_RS03660 - mechanosensitive ion channel protein MscS, at 832,108 to 832,920
_RS03660
BPHYT_RS03665: BPHYT_RS03665 - hypothetical protein, at 833,154 to 833,519
_RS03665
BPHYT_RS03670: BPHYT_RS03670 - peptidase U34, at 834,010 to 835,467
_RS03670
Position (kb) 833
834 Strain fitness (log2 ratio) -2
-1
0
1 at 832.211 kb on + strand, within BPHYT_RS03660 at 832.416 kb on - strand, within BPHYT_RS03660 at 832.416 kb on - strand, within BPHYT_RS03660 at 832.416 kb on - strand, within BPHYT_RS03660 at 832.416 kb on - strand, within BPHYT_RS03660 at 832.426 kb on - strand, within BPHYT_RS03660 at 832.745 kb on + strand, within BPHYT_RS03660 at 832.974 kb on + strand at 833.040 kb on - strand at 833.324 kb on - strand, within BPHYT_RS03665 at 833.349 kb on + strand, within BPHYT_RS03665 at 833.350 kb on - strand, within BPHYT_RS03665 at 833.350 kb on - strand, within BPHYT_RS03665 at 833.405 kb on + strand, within BPHYT_RS03665 at 833.406 kb on - strand, within BPHYT_RS03665 at 833.519 kb on + strand at 833.519 kb on + strand at 833.520 kb on - strand at 833.520 kb on - strand at 833.624 kb on - strand at 833.757 kb on + strand at 833.758 kb on - strand at 833.775 kb on - strand at 833.812 kb on - strand at 833.812 kb on - strand at 834.008 kb on - strand at 834.012 kb on - strand at 834.135 kb on + strand at 834.177 kb on - strand, within BPHYT_RS03670 at 834.416 kb on + strand, within BPHYT_RS03670 at 834.417 kb on - strand, within BPHYT_RS03670 at 834.460 kb on + strand, within BPHYT_RS03670 at 834.460 kb on + strand, within BPHYT_RS03670 at 834.461 kb on - strand, within BPHYT_RS03670 at 834.477 kb on - strand, within BPHYT_RS03670 at 834.486 kb on - strand, within BPHYT_RS03670
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 832,211 + BPHYT_RS03660 0.13 +0.1 832,416 - BPHYT_RS03660 0.38 -1.9 832,416 - BPHYT_RS03660 0.38 -1.3 832,416 - BPHYT_RS03660 0.38 -0.3 832,416 - BPHYT_RS03660 0.38 +0.7 832,426 - BPHYT_RS03660 0.39 -0.1 832,745 + BPHYT_RS03660 0.78 -0.7 832,974 + -0.3 833,040 - -1.1 833,324 - BPHYT_RS03665 0.46 +1.0 833,349 + BPHYT_RS03665 0.53 -0.4 833,350 - BPHYT_RS03665 0.54 +0.9 833,350 - BPHYT_RS03665 0.54 -0.1 833,405 + BPHYT_RS03665 0.69 -0.1 833,406 - BPHYT_RS03665 0.69 -1.6 833,519 + +1.0 833,519 + -0.2 833,520 - +0.5 833,520 - +0.5 833,624 - -1.4 833,757 + -0.3 833,758 - +0.2 833,775 - -0.1 833,812 - -1.6 833,812 - +0.4 834,008 - -0.5 834,012 - -0.9 834,135 + +0.1 834,177 - BPHYT_RS03670 0.11 +0.1 834,416 + BPHYT_RS03670 0.28 -1.5 834,417 - BPHYT_RS03670 0.28 -0.4 834,460 + BPHYT_RS03670 0.31 -0.8 834,460 + BPHYT_RS03670 0.31 -0.0 834,461 - BPHYT_RS03670 0.31 -1.0 834,477 - BPHYT_RS03670 0.32 +0.1 834,486 - BPHYT_RS03670 0.33 -1.2
Or see this region's nucleotide sequence