Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02935 and BPHYT_RS02940 are separated by 91 nucleotides BPHYT_RS02940 and BPHYT_RS02945 are separated by 58 nucleotides BPHYT_RS02945 and BPHYT_RS02950 are separated by 43 nucleotides
BPHYT_RS02935: BPHYT_RS02935 - potassium transporter, at 651,875 to 653,878
_RS02935
BPHYT_RS02940: BPHYT_RS02940 - adenine phosphoribosyltransferase, at 653,970 to 654,536
_RS02940
BPHYT_RS02945: BPHYT_RS02945 - lysine transporter LysE, at 654,595 to 655,209
_RS02945
BPHYT_RS02950: BPHYT_RS02950 - NUDIX hydrolase, at 655,253 to 656,116
_RS02950
Position (kb) 653
654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 653.113 kb on - strand, within BPHYT_RS02935 at 653.113 kb on - strand, within BPHYT_RS02935 at 653.180 kb on + strand, within BPHYT_RS02935 at 653.181 kb on - strand, within BPHYT_RS02935 at 653.327 kb on - strand, within BPHYT_RS02935 at 653.395 kb on + strand, within BPHYT_RS02935 at 653.579 kb on + strand, within BPHYT_RS02935 at 653.580 kb on - strand, within BPHYT_RS02935 at 653.580 kb on - strand, within BPHYT_RS02935 at 653.628 kb on + strand, within BPHYT_RS02935 at 653.628 kb on + strand, within BPHYT_RS02935 at 653.930 kb on - strand at 654.140 kb on + strand, within BPHYT_RS02940 at 654.141 kb on - strand, within BPHYT_RS02940 at 654.211 kb on - strand, within BPHYT_RS02940 at 654.261 kb on + strand, within BPHYT_RS02940 at 654.261 kb on + strand, within BPHYT_RS02940 at 654.262 kb on - strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.509 kb on + strand at 654.510 kb on - strand at 654.551 kb on + strand at 654.601 kb on - strand at 654.601 kb on - strand at 654.601 kb on - strand at 654.681 kb on + strand, within BPHYT_RS02945 at 654.681 kb on + strand, within BPHYT_RS02945 at 654.832 kb on + strand, within BPHYT_RS02945 at 654.833 kb on - strand, within BPHYT_RS02945 at 655.518 kb on - strand, within BPHYT_RS02950
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 653,113 - BPHYT_RS02935 0.62 +0.6 653,113 - BPHYT_RS02935 0.62 +1.3 653,180 + BPHYT_RS02935 0.65 +0.5 653,181 - BPHYT_RS02935 0.65 +0.5 653,327 - BPHYT_RS02935 0.72 -0.3 653,395 + BPHYT_RS02935 0.76 +0.2 653,579 + BPHYT_RS02935 0.85 +0.9 653,580 - BPHYT_RS02935 0.85 +0.3 653,580 - BPHYT_RS02935 0.85 +0.3 653,628 + BPHYT_RS02935 0.87 -0.3 653,628 + BPHYT_RS02935 0.87 -1.9 653,930 - +0.1 654,140 + BPHYT_RS02940 0.30 -0.2 654,141 - BPHYT_RS02940 0.30 -1.9 654,211 - BPHYT_RS02940 0.43 +0.5 654,261 + BPHYT_RS02940 0.51 +0.8 654,261 + BPHYT_RS02940 0.51 +0.7 654,262 - BPHYT_RS02940 0.51 -3.3 654,282 + BPHYT_RS02940 0.55 -0.9 654,282 + BPHYT_RS02940 0.55 -0.5 654,282 + BPHYT_RS02940 0.55 -0.3 654,282 + BPHYT_RS02940 0.55 +0.7 654,282 + BPHYT_RS02940 0.55 -1.3 654,282 + BPHYT_RS02940 0.55 -0.4 654,282 + BPHYT_RS02940 0.55 +1.1 654,509 + +0.5 654,510 - +1.9 654,551 + +0.2 654,601 - -0.7 654,601 - +6.7 654,601 - -0.4 654,681 + BPHYT_RS02945 0.14 +0.3 654,681 + BPHYT_RS02945 0.14 -1.9 654,832 + BPHYT_RS02945 0.39 -0.4 654,833 - BPHYT_RS02945 0.39 +0.2 655,518 - BPHYT_RS02950 0.31 +0.5
Or see this region's nucleotide sequence