Experiment: Stool_Day10_Mouse10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0632 and BT0633 are separated by 174 nucleotides BT0633 and BT0634 are separated by 45 nucleotides
BT0632: BT0632 - GTP-binding protein, membrane GTPase lepA (NCBI ptt file), at 778,426 to 780,207
BT0632
BT0633: BT0633 - putative Na+/H+ exchange protein (NCBI ptt file), at 780,382 to 781,527
BT0633
BT0634: BT0634 - Na+/H+ antiporter 1 (NCBI ptt file), at 781,573 to 782,892
BT0634
Position (kb) 780
781
782 Strain fitness (log2 ratio) -2
-1
0
1
2 at 780.460 kb on - strand at 780.464 kb on + strand at 780.465 kb on - strand at 780.470 kb on - strand at 780.470 kb on - strand at 780.480 kb on + strand at 780.481 kb on - strand at 780.489 kb on - strand at 780.554 kb on - strand, within BT0633 at 780.554 kb on - strand, within BT0633 at 780.558 kb on + strand, within BT0633 at 780.604 kb on + strand, within BT0633 at 780.605 kb on - strand, within BT0633 at 780.605 kb on - strand, within BT0633 at 780.612 kb on - strand, within BT0633 at 780.675 kb on - strand, within BT0633 at 780.693 kb on + strand, within BT0633 at 780.752 kb on + strand, within BT0633 at 780.856 kb on - strand, within BT0633 at 780.876 kb on + strand, within BT0633 at 780.877 kb on - strand, within BT0633 at 780.877 kb on - strand, within BT0633 at 780.909 kb on + strand, within BT0633 at 780.915 kb on + strand, within BT0633 at 780.939 kb on + strand, within BT0633 at 780.985 kb on + strand, within BT0633 at 781.024 kb on - strand, within BT0633 at 781.078 kb on - strand, within BT0633 at 781.146 kb on - strand, within BT0633 at 781.150 kb on - strand, within BT0633 at 781.287 kb on - strand, within BT0633 at 781.396 kb on - strand, within BT0633 at 781.409 kb on - strand, within BT0633 at 781.447 kb on - strand at 781.478 kb on + strand at 781.518 kb on + strand at 781.540 kb on - strand at 781.557 kb on - strand at 781.660 kb on - strand at 781.930 kb on + strand, within BT0634 at 782.018 kb on + strand, within BT0634 at 782.018 kb on + strand, within BT0634 at 782.019 kb on - strand, within BT0634 at 782.019 kb on - strand, within BT0634 at 782.106 kb on - strand, within BT0634 at 782.144 kb on - strand, within BT0634 at 782.209 kb on - strand, within BT0634 at 782.239 kb on - strand, within BT0634 at 782.325 kb on - strand, within BT0634 at 782.340 kb on + strand, within BT0634 at 782.349 kb on + strand, within BT0634 at 782.349 kb on + strand, within BT0634 at 782.350 kb on - strand, within BT0634 at 782.507 kb on - strand, within BT0634
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day10_Mouse10 remove 780,460 - -0.1 780,464 + -1.1 780,465 - -2.4 780,470 - -0.6 780,470 - -0.4 780,480 + +0.9 780,481 - -0.9 780,489 - -0.1 780,554 - BT0633 0.15 +1.9 780,554 - BT0633 0.15 +1.9 780,558 + BT0633 0.15 -0.9 780,604 + BT0633 0.19 -0.1 780,605 - BT0633 0.19 +0.3 780,605 - BT0633 0.19 -0.4 780,612 - BT0633 0.20 -0.7 780,675 - BT0633 0.26 +1.9 780,693 + BT0633 0.27 +0.9 780,752 + BT0633 0.32 +0.9 780,856 - BT0633 0.41 -0.1 780,876 + BT0633 0.43 -1.9 780,877 - BT0633 0.43 -0.1 780,877 - BT0633 0.43 +1.9 780,909 + BT0633 0.46 -1.1 780,915 + BT0633 0.47 -1.1 780,939 + BT0633 0.49 -1.9 780,985 + BT0633 0.53 +0.1 781,024 - BT0633 0.56 -1.7 781,078 - BT0633 0.61 -0.1 781,146 - BT0633 0.67 +0.5 781,150 - BT0633 0.67 -1.4 781,287 - BT0633 0.79 +0.2 781,396 - BT0633 0.88 -0.1 781,409 - BT0633 0.90 +1.3 781,447 - -0.7 781,478 + -0.7 781,518 + -0.7 781,540 - -0.9 781,557 - +1.1 781,660 - +0.5 781,930 + BT0634 0.27 -2.1 782,018 + BT0634 0.34 -0.6 782,018 + BT0634 0.34 -0.8 782,019 - BT0634 0.34 -0.1 782,019 - BT0634 0.34 -2.5 782,106 - BT0634 0.40 -0.7 782,144 - BT0634 0.43 +1.5 782,209 - BT0634 0.48 +0.9 782,239 - BT0634 0.50 +0.9 782,325 - BT0634 0.57 +0.9 782,340 + BT0634 0.58 -1.4 782,349 + BT0634 0.59 -1.1 782,349 + BT0634 0.59 -0.8 782,350 - BT0634 0.59 -0.1 782,507 - BT0634 0.71 -1.7
Or see this region's nucleotide sequence