Experiment: Stool_Day10_Mouse10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0521 and BT0522 overlap by 19 nucleotides BT0522 and BT0523 are separated by 15 nucleotides
BT0521: BT0521 - putative acetyl transferase (NCBI ptt file), at 643,713 to 644,336
BT0521
BT0522: BT0522 - hypothetical protein (NCBI ptt file), at 644,318 to 645,232
BT0522
BT0523: BT0523 - putative glycosyltransferase (NCBI ptt file), at 645,248 to 646,408
BT0523
Position (kb) 644
645
646 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 643.328 kb on + strand at 643.333 kb on - strand at 643.457 kb on + strand at 643.482 kb on - strand at 643.485 kb on + strand at 643.486 kb on - strand at 643.486 kb on - strand at 643.486 kb on - strand at 643.501 kb on + strand at 643.619 kb on + strand at 643.662 kb on + strand at 643.664 kb on + strand at 643.665 kb on - strand at 643.665 kb on - strand at 643.665 kb on - strand at 643.670 kb on - strand at 643.671 kb on + strand at 643.692 kb on - strand at 643.834 kb on - strand, within BT0521 at 643.848 kb on + strand, within BT0521 at 643.867 kb on - strand, within BT0521 at 643.924 kb on - strand at 643.970 kb on + strand, within BT0521 at 643.989 kb on - strand, within BT0521 at 644.040 kb on - strand at 644.063 kb on - strand, within BT0521 at 644.093 kb on + strand, within BT0521 at 644.094 kb on - strand, within BT0521 at 644.094 kb on - strand, within BT0521 at 644.116 kb on - strand, within BT0521 at 644.210 kb on - strand, within BT0521 at 644.212 kb on - strand, within BT0521 at 644.510 kb on + strand, within BT0522 at 644.556 kb on - strand, within BT0522 at 644.570 kb on + strand, within BT0522 at 644.571 kb on + strand, within BT0522 at 644.611 kb on - strand, within BT0522 at 644.634 kb on - strand, within BT0522 at 644.659 kb on + strand, within BT0522 at 644.660 kb on - strand, within BT0522 at 644.660 kb on - strand, within BT0522 at 644.661 kb on + strand, within BT0522 at 644.666 kb on - strand, within BT0522 at 644.810 kb on - strand, within BT0522 at 644.863 kb on + strand, within BT0522 at 644.864 kb on - strand, within BT0522 at 644.877 kb on - strand, within BT0522 at 644.905 kb on - strand, within BT0522 at 644.973 kb on - strand, within BT0522 at 644.973 kb on - strand, within BT0522 at 644.994 kb on - strand, within BT0522 at 645.054 kb on + strand, within BT0522 at 645.056 kb on + strand, within BT0522 at 645.086 kb on + strand, within BT0522 at 645.086 kb on + strand, within BT0522 at 645.086 kb on + strand, within BT0522 at 645.212 kb on + strand at 645.213 kb on - strand at 645.217 kb on - strand at 645.217 kb on - strand at 645.220 kb on + strand at 645.277 kb on + strand at 645.498 kb on - strand, within BT0523 at 645.500 kb on - strand, within BT0523 at 645.506 kb on - strand, within BT0523 at 645.506 kb on - strand, within BT0523 at 645.552 kb on + strand, within BT0523 at 645.553 kb on - strand, within BT0523 at 645.734 kb on + strand, within BT0523 at 645.735 kb on - strand, within BT0523 at 645.813 kb on + strand, within BT0523 at 645.860 kb on + strand, within BT0523 at 645.913 kb on + strand, within BT0523 at 645.947 kb on + strand, within BT0523 at 645.948 kb on - strand, within BT0523 at 645.953 kb on + strand, within BT0523 at 646.112 kb on - strand, within BT0523 at 646.112 kb on - strand, within BT0523 at 646.120 kb on + strand, within BT0523 at 646.148 kb on - strand, within BT0523 at 646.160 kb on - strand, within BT0523 at 646.163 kb on - strand, within BT0523 at 646.178 kb on + strand, within BT0523 at 646.178 kb on + strand, within BT0523 at 646.179 kb on - strand, within BT0523 at 646.187 kb on - strand, within BT0523
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day10_Mouse10 remove 643,328 + -3.3 643,333 - +0.8 643,457 + -0.5 643,482 - -1.0 643,485 + -1.2 643,486 - -2.6 643,486 - +0.8 643,486 - -1.5 643,501 + -1.2 643,619 + -0.7 643,662 + -2.0 643,664 + -2.7 643,665 - +0.3 643,665 - +1.8 643,665 - -0.2 643,670 - -1.9 643,671 + +2.4 643,692 - -0.8 643,834 - BT0521 0.19 -1.9 643,848 + BT0521 0.22 -0.7 643,867 - BT0521 0.25 -1.5 643,924 - -1.2 643,970 + BT0521 0.41 -1.2 643,989 - BT0521 0.44 +1.8 644,040 - -2.2 644,063 - BT0521 0.56 -0.7 644,093 + BT0521 0.61 -1.5 644,094 - BT0521 0.61 +1.4 644,094 - BT0521 0.61 -2.4 644,116 - BT0521 0.65 -0.2 644,210 - BT0521 0.80 -1.4 644,212 - BT0521 0.80 -2.7 644,510 + BT0522 0.21 -0.2 644,556 - BT0522 0.26 -0.7 644,570 + BT0522 0.28 -0.2 644,571 + BT0522 0.28 -1.4 644,611 - BT0522 0.32 +0.8 644,634 - BT0522 0.35 +0.8 644,659 + BT0522 0.37 -1.1 644,660 - BT0522 0.37 -1.7 644,660 - BT0522 0.37 -0.2 644,661 + BT0522 0.37 -0.2 644,666 - BT0522 0.38 -0.7 644,810 - BT0522 0.54 +2.2 644,863 + BT0522 0.60 -1.2 644,864 - BT0522 0.60 +0.8 644,877 - BT0522 0.61 -1.5 644,905 - BT0522 0.64 +1.8 644,973 - BT0522 0.72 -0.2 644,973 - BT0522 0.72 +1.8 644,994 - BT0522 0.74 +1.4 645,054 + BT0522 0.80 -1.0 645,056 + BT0522 0.81 +1.8 645,086 + BT0522 0.84 +0.3 645,086 + BT0522 0.84 +0.3 645,086 + BT0522 0.84 -0.2 645,212 + +0.0 645,213 - -1.2 645,217 - +0.8 645,217 - -0.7 645,220 + -2.6 645,277 + -1.2 645,498 - BT0523 0.22 -1.5 645,500 - BT0523 0.22 +1.4 645,506 - BT0523 0.22 -1.2 645,506 - BT0523 0.22 -1.5 645,552 + BT0523 0.26 -0.2 645,553 - BT0523 0.26 -0.6 645,734 + BT0523 0.42 +1.8 645,735 - BT0523 0.42 +0.8 645,813 + BT0523 0.49 -0.7 645,860 + BT0523 0.53 -1.5 645,913 + BT0523 0.57 -0.2 645,947 + BT0523 0.60 +0.0 645,948 - BT0523 0.60 +0.8 645,953 + BT0523 0.61 +1.8 646,112 - BT0523 0.74 -1.2 646,112 - BT0523 0.74 -1.5 646,120 + BT0523 0.75 +0.8 646,148 - BT0523 0.78 -0.5 646,160 - BT0523 0.79 +0.8 646,163 - BT0523 0.79 -2.2 646,178 + BT0523 0.80 +1.1 646,178 + BT0523 0.80 -1.5 646,179 - BT0523 0.80 -2.0 646,187 - BT0523 0.81 -0.7
Or see this region's nucleotide sequence