Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3836

Experiment: Stool_Day8_Mouse18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3835 and BT3836 are separated by 48 nucleotidesBT3836 and BT3837 are separated by 77 nucleotidesBT3837 and BT3838 are separated by 75 nucleotides BT3835: BT3835 - putative GTP-binding protein (NCBI ptt file), at 4,990,755 to 4,991,636 BT3835 BT3836: BT3836 - putative phosphoglycerate dehydrogenase (NCBI ptt file), at 4,991,685 to 4,992,998 BT3836 BT3837: BT3837 - ABC transporter ATP-binding protein (NCBI ptt file), at 4,993,076 to 4,993,843 BT3837 BT3838: BT3838 - conserved hypothetical protein (NCBI ptt file), at 4,993,919 to 4,994,662 BT3838 Position (kb) 4991 4992 4993Strain fitness (log2 ratio) -2 -1 0 1 2at 4991.591 kb on + strandat 4991.640 kb on + strandat 4991.640 kb on + strandat 4991.657 kb on + strandat 4991.676 kb on + strandat 4991.676 kb on + strandat 4992.997 kb on - strandat 4992.997 kb on - strandat 4993.004 kb on - strandat 4993.005 kb on + strandat 4993.005 kb on + strandat 4993.006 kb on - strandat 4993.012 kb on - strandat 4993.069 kb on - strandat 4993.069 kb on - strandat 4993.918 kb on + strandat 4993.918 kb on + strandat 4993.950 kb on - strandat 4993.950 kb on - strandat 4993.950 kb on - strandat 4993.951 kb on + strandat 4993.990 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stool_Day8_Mouse18
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4,991,591 + -1.2
4,991,640 + -0.2
4,991,640 + -1.2
4,991,657 + +1.4
4,991,676 + -0.2
4,991,676 + -1.6
4,992,997 - -1.0
4,992,997 - +0.0
4,993,004 - -1.4
4,993,005 + -0.8
4,993,005 + -0.4
4,993,006 - -2.0
4,993,012 - -0.9
4,993,069 - -2.2
4,993,069 - -0.0
4,993,918 + +1.8
4,993,918 + +0.8
4,993,950 - +0.8
4,993,950 - -0.2
4,993,950 - +1.1
4,993,951 + +0.8
4,993,990 + +1.8

Or see this region's nucleotide sequence