Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4124

Experiment: Stool_Day8_Mouse10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stool_Day8_Mouse10
5,403,756	-		BT4123	0.59	+1.0
5,403,898	+		BT4123	0.68	-1.8
5,403,898	+		BT4123	0.68	-1.0
5,403,899	-		BT4123	0.68	+1.0
5,403,900	+		BT4123	0.68	-1.4
5,403,900	+		BT4123	0.68	-1.1
5,403,974	-		BT4123	0.73	+1.0
5,403,991	+		BT4123	0.74	-1.2
5,403,998	+		BT4123	0.74	-0.8
5,403,998	+		BT4123	0.74	-1.2
5,404,044	+		BT4123	0.77	+2.0
5,404,044	+		BT4123	0.77	+1.0
5,404,045	-		BT4123	0.77	+1.0
5,404,119	+		BT4123	0.82	+0.6
5,404,161	+		BT4123	0.85	-2.6
5,404,190	+		BT4123	0.87	-0.6
5,404,197	-		BT4123	0.87	+1.0
5,404,197	-		BT4123	0.87	-0.7
5,404,220	-		BT4123	0.88	-1.0
5,404,220	-		BT4123	0.88	-0.6
5,404,224	-		BT4123	0.89	-0.5
5,404,243	+		BT4123	0.90	-0.1
5,404,271	-				-1.0
5,404,310	-				-0.9
5,404,315	+				-0.6
5,404,326	-				-1.6
5,404,335	-				-0.6
5,404,422	+				-0.0
5,404,422	+				-0.0
5,404,423	-				-2.5
5,404,444	-				+1.2
5,404,447	+				-0.9
5,404,447	+				-0.6
5,404,448	-				-3.2
5,404,473	+				-0.3
5,404,505	+				-3.6
5,404,520	+				-1.0
5,404,521	-				-1.6
5,404,523	+				-0.0
5,404,523	+				-0.6
5,404,619	-				-1.7
5,404,653	+				+1.0
5,404,653	+				+1.0
5,404,676	-				-1.3
5,404,729	-				-0.6
5,404,731	-				+0.4
5,404,769	-				+1.8
5,404,792	+				-0.4
5,404,811	-				-0.4
5,404,937	-				-1.5
5,404,990	-				-0.5
5,405,038	-				-0.0
5,405,039	+				-1.3
5,405,122	-		BT4124	0.11	-0.5
5,405,123	+		BT4124	0.11	+1.6
5,405,123	+		BT4124	0.11	-0.6
5,405,124	-		BT4124	0.11	-1.6
5,405,126	-		BT4124	0.11	-0.5
5,405,132	-		BT4124	0.11	-0.6
5,405,185	+		BT4124	0.13	+0.4
5,405,186	-		BT4124	0.13	+1.7
5,405,212	-		BT4124	0.13	-0.2
5,405,212	-		BT4124	0.13	-1.8
5,405,292	+		BT4124	0.15	-1.0
5,405,296	-		BT4124	0.15	-2.0
5,405,347	-		BT4124	0.16	-0.0
5,405,360	-		BT4124	0.17	-0.0
5,405,410	+		BT4124	0.18	-0.0
5,405,413	-		BT4124	0.18	-1.2
5,405,415	+		BT4124	0.18	-2.0
5,405,415	+		BT4124	0.18	-0.8
5,405,415	+		BT4124	0.18	-0.6
5,405,416	-		BT4124	0.18	-0.7
5,405,446	-		BT4124	0.19	-0.6
5,405,584	+		BT4124	0.22	-1.3
5,405,842	-		BT4124	0.28	+1.0
5,405,842	-		BT4124	0.28	-0.9
5,405,842	-		BT4124	0.28	-0.9
5,405,909	+		BT4124	0.29	+1.0
5,405,910	-		BT4124	0.29	+1.7
5,405,910	-		BT4124	0.29	+2.2
5,405,911	+		BT4124	0.29	+1.4
5,405,912	-		BT4124	0.29	-2.7
5,405,919	+		BT4124	0.29	-0.0
5,405,920	-		BT4124	0.29	-1.0
5,405,984	-		BT4124	0.31	-1.0
5,406,082	+		BT4124	0.33	+0.3
5,406,083	-		BT4124	0.33	+2.6
5,406,083	-		BT4124	0.33	-1.1
5,406,083	-		BT4124	0.33	+0.5
5,406,087	+		BT4124	0.33	-1.6
5,406,211	+		BT4124	0.36	-0.9
5,406,212	-		BT4124	0.36	+1.0
5,406,212	-		BT4124	0.36	-1.4
5,406,219	+		BT4124	0.36	-1.1
5,406,282	-		BT4124	0.38	-0.6
5,406,299	+		BT4124	0.38	+0.4
5,406,300	-		BT4124	0.38	-1.6
5,406,301	+		BT4124	0.38	+1.0
5,406,302	-		BT4124	0.38	-0.0
5,406,302	-		BT4124	0.38	-0.3
5,406,338	+		BT4124	0.39	+1.0
5,406,339	-		BT4124	0.39	+1.8
5,406,379	+		BT4124	0.40	-2.2
5,406,403	-		BT4124	0.41	-0.8
5,406,415	+		BT4124	0.41	+1.0
5,406,416	-		BT4124	0.41	+0.3
5,406,450	+		BT4124	0.42	-3.6
5,406,566	+		BT4124	0.44	-2.6
5,406,592	-		BT4124	0.45	-1.8
5,406,619	+		BT4124	0.46	-0.0
5,406,699	-		BT4124	0.47	+1.0
5,406,757	+		BT4124	0.49	+1.0
5,406,758	-		BT4124	0.49	-0.6
5,406,825	+		BT4124	0.50	-0.1
5,406,826	-		BT4124	0.50	-0.6
5,406,826	-		BT4124	0.50	+0.2
5,406,961	-		BT4124	0.53	+1.6
5,406,963	-		BT4124	0.53	-1.5
5,406,963	-		BT4124	0.53	+0.9
5,406,963	-		BT4124	0.53	-0.5
5,407,038	+		BT4124	0.55	-0.9
5,407,038	+		BT4124	0.55	-0.0
5,407,040	+		BT4124	0.55	+2.0
5,407,041	-		BT4124	0.55	-0.6
5,407,041	-		BT4124	0.55	+1.0
5,407,064	+		BT4124	0.56	+1.2
5,407,064	+		BT4124	0.56	-1.1
5,407,068	+		BT4124	0.56	-1.8
5,407,068	+		BT4124	0.56	-1.8
5,407,068	+		BT4124	0.56	-2.0
5,407,283	-		BT4124	0.61	-0.3
5,407,306	-		BT4124	0.61	-2.5
5,407,338	-		BT4124	0.62	+2.6
5,407,346	-		BT4124	0.62	-0.0
5,407,366	-		BT4124	0.63	+1.2
5,407,383	-		BT4124	0.63	-1.8
5,407,385	-		BT4124	0.63	-1.0
5,407,385	-		BT4124	0.63	+1.0
5,407,406	+		BT4124	0.64	-0.6
5,407,407	-		BT4124	0.64	-1.0
5,407,439	-		BT4124	0.64	-0.7
5,407,498	+		BT4124	0.66	-0.6
5,407,538	-		BT4124	0.67	-1.0
5,407,538	-		BT4124	0.67	+1.0
5,407,567	+		BT4124	0.67	+0.3
5,407,590	-		BT4124	0.68	-2.2
5,407,590	-		BT4124	0.68	+2.0
5,407,716	+		BT4124	0.71	+1.0
5,407,718	+		BT4124	0.71	-0.0
5,407,722	+		BT4124	0.71	+2.0
5,407,722	+		BT4124	0.71	+0.7
5,407,723	-		BT4124	0.71	+1.0
5,407,723	-		BT4124	0.71	-0.0
5,407,723	-		BT4124	0.71	-0.9
5,407,880	+		BT4124	0.75	-0.4
5,407,880	+		BT4124	0.75	-1.5
5,407,883	+		BT4124	0.75	-0.0
5,407,916	-		BT4124	0.75	-0.8
5,408,023	-		BT4124	0.78	+2.0
5,408,059	+		BT4124	0.79	+0.4
5,408,069	+		BT4124	0.79	-0.6
5,408,070	-		BT4124	0.79	-1.8
5,408,081	+		BT4124	0.79	-2.3
5,408,092	+		BT4124	0.79	-1.0
5,408,124	+		BT4124	0.80	+1.2
5,408,158	-		BT4124	0.81	-0.0
5,408,160	-		BT4124	0.81	+1.0
5,408,163	+		BT4124	0.81	-0.0
5,408,341	-		BT4124	0.85	-0.6
5,408,341	-		BT4124	0.85	+0.6
5,408,342	+		BT4124	0.85	+0.3
5,408,380	+		BT4124	0.86	-0.7
5,408,381	-		BT4124	0.86	-1.0
5,408,443	-		BT4124	0.87	-4.5
5,408,444	+		BT4124	0.87	+2.0
5,408,446	+		BT4124	0.88	-1.3
5,408,446	+		BT4124	0.88	+0.4
5,408,447	-		BT4124	0.88	+0.0
5,408,525	-		BT4124	0.89	-1.3
5,408,585	+				+0.4
5,408,585	+				-1.0
5,408,604	+				+1.0
5,408,605	-				-1.8
5,408,674	-				-0.6
5,408,674	-				+3.0
5,408,674	-				-2.1
5,408,771	+				+1.0
5,408,797	-				-0.2
5,408,797	-				+1.0
5,408,922	-				-1.3
5,408,948	+				+1.3
5,408,949	-				-0.1
5,408,949	-				-1.0
5,408,965	-				+2.0
5,409,066	+				-0.3
5,409,140	+				-1.0
5,409,141	-				-0.2
5,409,159	-				-0.6
5,409,172	+				+1.0
5,409,265	-				-0.2
5,409,433	-				+1.4
5,409,513	-				+0.0
5,409,568	-		BT4125	0.14	-2.2
5,409,572	-		BT4125	0.14	+0.0
5,409,572	-		BT4125	0.14	+0.0
5,409,691	+		BT4125	0.26	+0.5
5,409,703	+		BT4125	0.28	-2.2
5,409,712	-		BT4125	0.29	-2.7
5,409,741	+		BT4125	0.32	+1.0
5,409,742	-		BT4125	0.32	-0.6
5,409,776	+		BT4125	0.35	-2.1
5,409,924	+		BT4125	0.50	-0.1
5,409,924	+		BT4125	0.50	-0.4
5,409,924	+		BT4125	0.50	+0.0
5,409,925	-		BT4125	0.50	-0.3
5,409,929	-		BT4125	0.51	-1.6