Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3560

Experiment: Stool_Day8_Mouse7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stool_Day8_Mouse7
4,602,941	-		BT3559	0.23	+0.7
4,602,941	-		BT3559	0.23	-1.3
4,602,986	+		BT3559	0.27	+0.2
4,602,989	-		BT3559	0.28	-0.8
4,602,990	+		BT3559	0.28	+1.7
4,602,991	-		BT3559	0.28	-0.3
4,602,991	-		BT3559	0.28	+0.7
4,603,032	+		BT3559	0.32	+0.7
4,603,074	-		BT3559	0.36	-0.9
4,603,113	+		BT3559	0.40	-0.3
4,603,129	-		BT3559	0.41	-2.0
4,603,260	-		BT3559	0.54	-1.2
4,603,261	+		BT3559	0.54	-1.3
4,603,261	+		BT3559	0.54	-0.9
4,603,265	+		BT3559	0.54	+0.6
4,603,265	+		BT3559	0.54	-0.9
4,603,268	+		BT3559	0.55	+3.4
4,603,269	-		BT3559	0.55	+0.7
4,603,286	+		BT3559	0.56	-1.1
4,603,286	+		BT3559	0.56	-1.0
4,603,287	-		BT3559	0.56	-3.8
4,603,287	-		BT3559	0.56	-0.3
4,603,287	-		BT3559	0.56	+0.2
4,603,289	-		BT3559	0.57	-2.3
4,603,289	-		BT3559	0.57	-1.3
4,603,334	-		BT3559	0.61	-0.2
4,603,376	-		BT3559	0.65	-1.9
4,603,467	-		BT3559	0.74	-0.1
4,603,470	-		BT3559	0.74	+0.1
4,603,486	-		BT3559	0.76	+0.7
4,603,510	-		BT3559	0.78	-2.9
4,603,582	+		BT3559	0.85	+0.7
4,603,583	-		BT3559	0.85	+0.7
4,603,681	+				-0.3
4,603,681	+				-2.3
4,603,705	-				-0.4
4,603,738	-				-0.3
4,603,784	+				-1.3
4,603,845	-				+1.7
4,603,845	-				-1.3
4,603,845	-				+0.1
4,603,847	+				-0.3
4,603,872	-				-0.3
4,603,883	-				+2.2
4,603,888	-				-0.7
4,603,930	+				-0.3
4,603,986	+				+0.1
4,604,179	-				-0.3
4,604,200	+		BT3560	0.10	+0.4
4,604,201	-		BT3560	0.10	-0.9
4,604,203	-		BT3560	0.11	-1.9
4,604,205	+		BT3560	0.11	+1.2
4,604,205	+		BT3560	0.11	-0.9
4,604,228	+		BT3560	0.11	+0.7
4,604,262	-		BT3560	0.13	-1.7
4,604,283	+		BT3560	0.14	+1.7
4,604,284	-		BT3560	0.14	+0.5
4,604,317	-		BT3560	0.15	-1.5
4,604,346	+		BT3560	0.16	+0.7
4,604,349	+		BT3560	0.16	-1.3
4,604,374	+		BT3560	0.17	-0.7
4,604,434	-		BT3560	0.20	+1.7
4,604,434	-		BT3560	0.20	-1.8
4,604,437	+		BT3560	0.20	-0.3
4,604,438	-		BT3560	0.20	-0.7
4,604,438	-		BT3560	0.20	-1.0
4,604,438	-		BT3560	0.20	-1.3
4,604,439	+		BT3560	0.20	+0.4
4,604,534	-		BT3560	0.24	-2.3
4,604,586	+		BT3560	0.26	-0.3
4,604,596	-		BT3560	0.26	+0.5
4,604,598	-		BT3560	0.26	+0.7
4,604,601	+		BT3560	0.26	-1.4
4,604,602	-		BT3560	0.26	+0.2
4,604,678	-		BT3560	0.29	+1.2
4,604,678	-		BT3560	0.29	+1.4
4,604,733	-		BT3560	0.31	-0.2
4,604,821	-		BT3560	0.35	+1.2
4,604,823	+		BT3560	0.35	+0.9
4,604,823	+		BT3560	0.35	+3.0
4,604,823	+		BT3560	0.35	-0.3
4,604,824	-		BT3560	0.35	+0.1
4,604,827	+		BT3560	0.35	+0.7
4,604,827	+		BT3560	0.35	-0.9
4,604,886	+		BT3560	0.37	+0.7
4,604,887	-		BT3560	0.37	+0.1
4,604,905	-		BT3560	0.38	-0.5
4,604,916	-		BT3560	0.39	-0.3
4,604,918	-		BT3560	0.39	-0.3
4,604,918	-		BT3560	0.39	+0.5
4,604,923	-		BT3560	0.39	-0.3
4,604,970	-		BT3560	0.41	+0.7
4,604,992	-		BT3560	0.42	+0.3
4,605,091	-		BT3560	0.45	+0.2
4,605,151	-		BT3560	0.48	-0.9
4,605,154	+		BT3560	0.48	-0.2
4,605,154	+		BT3560	0.48	-0.3
4,605,155	-		BT3560	0.48	+1.8
4,605,180	+		BT3560	0.49	+1.3
4,605,230	+		BT3560	0.51	+0.5
4,605,231	-		BT3560	0.51	-2.2
4,605,235	-		BT3560	0.51	+0.1
4,605,247	-		BT3560	0.52	+0.7
4,605,279	-		BT3560	0.53	+0.5
4,605,333	+		BT3560	0.55	-0.3
4,605,334	-		BT3560	0.55	-1.7
4,605,349	+		BT3560	0.56	-0.3
4,605,349	+		BT3560	0.56	+0.4
4,605,351	+		BT3560	0.56	-0.1
4,605,352	-				-1.3
4,605,354	+		BT3560	0.56	+0.7
4,605,378	-		BT3560	0.57	-0.3
4,605,418	+		BT3560	0.58	-1.4
4,605,474	+		BT3560	0.61	-0.3
4,605,490	-		BT3560	0.61	+2.7
4,605,553	-		BT3560	0.64	+0.4
4,605,557	-		BT3560	0.64	-0.9
4,605,557	-		BT3560	0.64	-1.3
4,605,561	+		BT3560	0.64	+0.7
4,605,561	+		BT3560	0.64	-2.9
4,605,622	+		BT3560	0.66	+0.7
4,605,623	-		BT3560	0.66	+0.9
4,605,625	-		BT3560	0.66	-0.5
4,605,751	+		BT3560	0.71	-2.2
4,605,752	-		BT3560	0.71	-0.0
4,605,754	-		BT3560	0.72	+0.7
4,605,791	-		BT3560	0.73	+0.1
4,605,913	-		BT3560	0.78	-0.9
4,605,932	-		BT3560	0.79	-1.1
4,605,981	+		BT3560	0.80	-0.3
4,605,982	-		BT3560	0.81	+2.7
4,605,985	-		BT3560	0.81	-0.9
4,606,037	+		BT3560	0.83	-0.7
4,606,058	-		BT3560	0.84	+0.2
4,606,058	-		BT3560	0.84	+0.7
4,606,139	+		BT3560	0.87	-0.9
4,606,144	-		BT3560	0.87	-0.9
4,606,148	+		BT3560	0.87	-0.3
4,606,182	+		BT3560	0.88	+0.7
4,606,203	+		BT3560	0.89	+0.1
4,606,203	+		BT3560	0.89	-0.6
4,606,254	+				-0.3
4,606,265	-				+1.2
4,606,265	-				+0.1
4,606,299	+				+1.7
4,606,371	+				+0.5
4,606,371	+				+0.7
4,606,375	+				-0.3
4,606,375	+				+0.1
4,606,376	-				+0.1
4,606,376	-				+0.4
4,606,395	+				+0.7
4,606,396	-				-0.3
4,606,399	+				-1.3
4,606,400	-				+0.2
4,606,427	-				-0.3
4,606,429	+				-0.1
4,606,430	-				-0.9
4,606,474	+				-0.8
4,606,475	-				-1.3
4,606,478	+				-0.5
4,606,571	-				-1.0
4,606,586	-				-1.9
4,606,607	+		BT3561	0.12	-0.9
4,606,612	+		BT3561	0.12	-2.2
4,606,612	+		BT3561	0.12	-3.0
4,606,612	+		BT3561	0.12	+3.5
4,606,624	-		BT3561	0.14	-0.6
4,606,624	-		BT3561	0.14	-1.1
4,606,624	-		BT3561	0.14	-1.3
4,606,668	-		BT3561	0.19	-0.3
4,606,732	-		BT3561	0.27	-1.1
4,606,732	-		BT3561	0.27	+0.1
4,606,734	+		BT3561	0.27	-1.7
4,606,735	-		BT3561	0.27	-0.7
4,606,737	+		BT3561	0.27	+0.7
4,606,737	+		BT3561	0.27	-0.3
4,606,738	-		BT3561	0.28	-1.4
4,606,798	+		BT3561	0.35	-1.9
4,606,799	-		BT3561	0.35	-2.3
4,606,799	-		BT3561	0.35	-0.6
4,606,806	+		BT3561	0.36	-0.9
4,606,806	+		BT3561	0.36	-3.6
4,606,829	+		BT3561	0.38	-2.3
4,606,830	-		BT3561	0.39	-3.3
4,606,830	-		BT3561	0.39	+0.7
4,606,834	+		BT3561	0.39	-3.7
4,606,884	+		BT3561	0.45	+0.1
4,606,885	-		BT3561	0.45	-0.3
4,606,912	-		BT3561	0.48	-2.6
4,606,915	+		BT3561	0.49	-0.9
4,606,916	-		BT3561	0.49	+0.2
4,606,916	-		BT3561	0.49	-0.7
4,606,919	-		BT3561	0.49	-1.0
4,606,919	-		BT3561	0.49	+0.7
4,606,942	+		BT3561	0.52	-2.7
4,606,984	+		BT3561	0.57	+1.7
4,607,048	+		BT3561	0.65	-1.3
4,607,048	+		BT3561	0.65	+0.1
4,607,053	+		BT3561	0.65	-2.1
4,607,070	+		BT3561	0.67	+0.7
4,607,071	-		BT3561	0.68	+0.7
4,607,092	+		BT3561	0.70	-1.7
4,607,092	+		BT3561	0.70	-0.3
4,607,098	+		BT3561	0.71	-2.7
4,607,098	+		BT3561	0.71	-1.3
4,607,119	+		BT3561	0.73	-2.3
4,607,168	-		BT3561	0.79	-2.5
4,607,217	-		BT3561	0.85	-0.9
4,607,217	-		BT3561	0.85	-0.9
4,607,222	-		BT3561	0.86	-1.5
4,607,265	+				-2.8
4,607,266	-				-1.7
4,607,266	-				-2.8
4,607,266	-				-1.3
4,607,269	+				+0.7
4,607,283	-				-1.0
4,607,284	+				-1.3
4,607,291	-				-0.3
4,607,304	+				-3.2
4,607,304	+				-1.9
4,607,309	-				-0.9
4,607,309	-				-0.9
4,607,323	+				-0.3
4,607,336	-				-0.3
4,607,441	+				-1.9
4,607,442	-				-0.9
4,607,442	-				+0.7