Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3442

Experiment: Stool_Day8_Mouse7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stool_Day8_Mouse7
4,432,721	+		BT3440	0.73	-0.4
4,432,754	-		BT3440	0.76	-3.7
4,432,784	-		BT3440	0.78	-1.7
4,432,833	+		BT3440	0.82	-1.4
4,432,833	+		BT3440	0.82	-2.8
4,432,834	-		BT3440	0.82	-1.7
4,432,837	+		BT3440	0.82	-0.4
4,432,852	+		BT3440	0.83	-0.4
4,432,868	+		BT3440	0.84	-2.4
4,432,964	-				-1.0
4,433,074	+				-3.9
4,433,075	-				-2.8
4,433,095	+				-5.1
4,433,095	+				-4.1
4,433,132	+				-0.4
4,433,132	+				-1.7
4,433,132	+				-3.2
4,433,134	+				-1.9
4,433,135	-				-0.5
4,433,193	+		BT3441	0.14	+0.6
4,433,194	-		BT3441	0.15	+0.3
4,433,234	+		BT3441	0.27	-0.9
4,433,254	+				-0.9
4,433,356	+		BT3441	0.65	-2.4
4,433,378	+		BT3441	0.71	-2.2
4,433,385	-		BT3441	0.73	-0.9
4,433,422	+		BT3441	0.85	-2.9
4,433,499	-				+0.6
4,433,564	+				-0.9
4,433,668	-				-0.4
4,433,689	-				-1.4
4,433,710	+				-1.7
4,433,721	+				-0.9
4,433,769	+				-0.9
4,433,770	-				-2.2
4,433,770	-				-1.4
4,433,791	-				-1.4
4,433,791	-				-4.7
4,433,812	-				-1.7
4,433,884	-		BT3442	0.12	-2.5
4,433,886	-		BT3442	0.12	-2.7
4,433,887	+		BT3442	0.12	-3.5
4,433,887	+		BT3442	0.12	+0.6
4,433,889	+		BT3442	0.12	-2.5
4,433,889	+		BT3442	0.12	-0.9
4,433,889	+		BT3442	0.12	-1.4
4,433,890	-		BT3442	0.12	-2.4
4,433,891	+		BT3442	0.12	-2.2
4,433,891	+		BT3442	0.12	-4.4
4,433,892	-		BT3442	0.13	-3.6
4,433,892	-		BT3442	0.13	-1.8
4,433,892	-		BT3442	0.13	+0.1
4,433,932	-		BT3442	0.15	-3.9
4,433,968	-		BT3442	0.17	-1.4
4,434,014	+		BT3442	0.20	-4.8
4,434,016	+		BT3442	0.20	-1.0
4,434,030	+		BT3442	0.21	-4.8
4,434,123	+		BT3442	0.26	+0.6
4,434,167	+		BT3442	0.29	-0.9
4,434,170	-		BT3442	0.29	-3.4
4,434,170	-		BT3442	0.29	-1.5
4,434,170	-		BT3442	0.29	-1.7
4,434,175	+		BT3442	0.29	-1.4
4,434,176	-		BT3442	0.29	-5.4
4,434,186	+		BT3442	0.30	-3.9
4,434,187	-		BT3442	0.30	-5.9
4,434,187	-		BT3442	0.30	-3.5
4,434,187	-		BT3442	0.30	-0.4
4,434,236	+		BT3442	0.33	-0.9
4,434,239	+		BT3442	0.33	-1.7
4,434,241	+		BT3442	0.33	-2.9
4,434,241	+		BT3442	0.33	-1.2
4,434,242	-		BT3442	0.33	+0.6
4,434,242	-				-1.9
4,434,242	-		BT3442	0.33	-0.9
4,434,242	-		BT3442	0.33	+0.6
4,434,250	+		BT3442	0.34	+0.6
4,434,251	-		BT3442	0.34	-4.4
4,434,252	+		BT3442	0.34	-4.8
4,434,253	-		BT3442	0.34	-3.8
4,434,277	-		BT3442	0.35	-4.1
4,434,293	-		BT3442	0.36	-2.4
4,434,299	+		BT3442	0.37	-3.4
4,434,299	+		BT3442	0.37	-4.3
4,434,299	+		BT3442	0.37	-4.4
4,434,299	+		BT3442	0.37	-1.7
4,434,324	+		BT3442	0.38	-3.1
4,434,354	+		BT3442	0.40	-1.9
4,434,357	+		BT3442	0.40	-3.3
4,434,360	+		BT3442	0.40	+0.6
4,434,361	-		BT3442	0.40	-3.5
4,434,376	+		BT3442	0.41	-1.4
4,434,396	+		BT3442	0.42	-1.4
4,434,398	+		BT3442	0.42	+2.2
4,434,399	-		BT3442	0.42	+0.6
4,434,399	-		BT3442	0.42	-1.7
4,434,412	+		BT3442	0.43	-1.7
4,434,413	-		BT3442	0.43	-1.4
4,434,415	+		BT3442	0.43	-3.6
4,434,417	+		BT3442	0.44	-4.6
4,434,418	-		BT3442	0.44	-4.2
4,434,421	-		BT3442	0.44	-3.4
4,434,421	-		BT3442	0.44	-0.4
4,434,423	+		BT3442	0.44	-3.4
4,434,425	+		BT3442	0.44	-1.4
4,434,426	-		BT3442	0.44	+0.6
4,434,456	-		BT3442	0.46	-3.4
4,434,474	-		BT3442	0.47	-1.8
4,434,495	+		BT3442	0.48	-2.7
4,434,495	+		BT3442	0.48	-1.9
4,434,501	+		BT3442	0.49	-1.6
4,434,501	+		BT3442	0.49	-0.4
4,434,503	+		BT3442	0.49	-3.5
4,434,503	+		BT3442	0.49	+0.6
4,434,503	+		BT3442	0.49	-3.4
4,434,508	-		BT3442	0.49	-0.9
4,434,559	+		BT3442	0.52	-1.7
4,434,574	+		BT3442	0.53	-3.3
4,434,578	+		BT3442	0.53	-0.4
4,434,578	+		BT3442	0.53	-4.6
4,434,579	-		BT3442	0.53	-3.8
4,434,580	+		BT3442	0.53	-1.7
4,434,580	+		BT3442	0.53	-3.0
4,434,585	+		BT3442	0.53	-0.9
4,434,586	-		BT3442	0.54	-2.2
4,434,589	+		BT3442	0.54	-3.4
4,434,603	+		BT3442	0.55	-0.4
4,434,659	+		BT3442	0.58	-2.4
4,434,666	+		BT3442	0.58	-0.9
4,434,667	-		BT3442	0.58	-1.5
4,434,674	-		BT3442	0.59	-2.9
4,434,674	-		BT3442	0.59	-3.2
4,434,677	+		BT3442	0.59	-2.5
4,434,677	+		BT3442	0.59	-3.5
4,434,677	+		BT3442	0.59	+0.6
4,434,677	+		BT3442	0.59	+0.6
4,434,677	+		BT3442	0.59	-2.5
4,434,677	+		BT3442	0.59	-0.9
4,434,678	-		BT3442	0.59	-2.8
4,434,678	-		BT3442	0.59	-4.1
4,434,680	-		BT3442	0.59	+0.6
4,434,680	-		BT3442	0.59	-0.9
4,434,713	-		BT3442	0.61	-3.7
4,434,713	-		BT3442	0.61	-2.2
4,434,754	-		BT3442	0.63	-1.9
4,434,798	-		BT3442	0.66	-1.4
4,434,831	-		BT3442	0.68	-0.4
4,434,916	-		BT3442	0.73	-2.9
4,434,916	-		BT3442	0.73	-2.0
4,434,917	+		BT3442	0.73	+1.2
4,434,918	-		BT3442	0.73	+0.6
4,434,918	-		BT3442	0.73	-1.4
4,434,918	-		BT3442	0.73	-0.4
4,434,919	+		BT3442	0.73	-3.2
4,434,928	+		BT3442	0.74	-1.7
4,434,930	+		BT3442	0.74	-0.4
4,434,932	+		BT3442	0.74	-1.7
4,434,932	+		BT3442	0.74	-0.1
4,434,936	+		BT3442	0.74	-3.9
4,434,936	+		BT3442	0.74	+0.6
4,434,936	+		BT3442	0.74	-0.4
4,434,937	-		BT3442	0.74	-2.2
4,434,937	-		BT3442	0.74	+1.6
4,434,937	-		BT3442	0.74	-0.9
4,434,937	-		BT3442	0.74	-4.2
4,434,937	-		BT3442	0.74	-0.9
4,434,938	+		BT3442	0.74	-2.5
4,434,938	+		BT3442	0.74	-3.4
4,434,938	+		BT3442	0.74	-2.4
4,434,938	+		BT3442	0.74	+0.6
4,434,938	+		BT3442	0.74	-0.4
4,434,939	-		BT3442	0.74	+0.1
4,434,939	-		BT3442	0.74	-0.9
4,434,939	-		BT3442	0.74	-1.4
4,434,939	-		BT3442	0.74	-3.9
4,434,939	-		BT3442	0.74	-4.1
4,434,939	-		BT3442	0.74	-0.4
4,434,942	+		BT3442	0.75	-4.4
4,434,942	+		BT3442	0.75	-0.4
4,434,996	+		BT3442	0.78	-4.6
4,434,997	-		BT3442	0.78	-1.1
4,434,997	-		BT3442	0.78	-4.7
4,434,998	+		BT3442	0.78	-2.2
4,434,999	-		BT3442	0.78	-3.3
4,434,999	-		BT3442	0.78	-1.5
4,435,000	+		BT3442	0.78	-5.0
4,435,001	-		BT3442	0.78	-4.4
4,435,053	-		BT3442	0.81	-2.2
4,435,108	-		BT3442	0.84	-4.2
4,435,124	+		BT3442	0.85	-3.5
4,435,141	-		BT3442	0.86	-2.7
4,435,176	+		BT3442	0.88	-3.5
4,435,176	+		BT3442	0.88	-2.6
4,435,198	-		BT3442	0.90	-0.4
4,435,222	+				+0.2
4,435,222	+				-2.2
4,435,327	+				-1.9
4,435,328	-				+0.8
4,435,339	-				-3.4
4,435,339	-				-2.7
4,435,343	-				-3.3
4,435,352	-				-0.4
4,435,352	-				+0.6
4,435,352	-				-1.9
4,435,387	+				+0.6
4,435,486	-				+3.0
4,435,572	+				-0.9
4,435,588	+				-2.4
4,435,589	-				-0.9
4,435,612	+				-0.4
4,435,615	+				-2.0
4,435,624	-				+0.1
4,435,624	-				-0.4
4,435,649	-				-1.1
4,435,674	+				-0.9
4,435,761	-				-0.4
4,435,761	-				-0.9
4,435,787	-				+2.0
4,435,799	+				-4.2
4,435,799	+				-0.8
4,435,800	-				+0.6
4,435,800	-				+1.6
4,435,800	-				+0.6
4,435,800	-				+1.4
4,435,800	-				+1.6
4,435,800	-				-2.5
4,435,810	-				+2.4
4,435,848	-				+0.4
4,435,848	-				+1.5
4,435,920	+				-3.5
4,435,931	-				-1.8
4,436,041	-				-1.6
4,436,115	+		BT3443	0.26	-1.7
4,436,115	+		BT3443	0.26	-1.7
4,436,186	+		BT3443	0.44	-3.2
4,436,186	+		BT3443	0.44	-0.4
4,436,187	-		BT3443	0.44	-1.9
4,436,187	-		BT3443	0.44	-0.7
4,436,253	-		BT3443	0.60	-0.9
4,436,326	-		BT3443	0.78	+1.6
4,436,371	+		BT3443	0.89	-1.8