Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3338

Experiment: Stool_Day8_Mouse7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stool_Day8_Mouse7
4,295,822	-		BT3337	0.36	-0.4
4,295,873	-		BT3337	0.40	-4.9
4,295,933	+		BT3337	0.44	-0.9
4,295,975	-		BT3337	0.47	-2.8
4,295,975	-		BT3337	0.47	-6.1
4,296,032	+		BT3337	0.51	-1.7
4,296,032	+		BT3337	0.51	-2.4
4,296,119	-		BT3337	0.57	-4.1
4,296,182	-		BT3337	0.62	-2.9
4,296,186	+		BT3337	0.62	-2.2
4,296,187	-		BT3337	0.62	+0.6
4,296,187	-		BT3337	0.62	-4.0
4,296,187	-		BT3337	0.62	-5.6
4,296,187	-		BT3337	0.62	-0.9
4,296,208	+		BT3337	0.64	-2.5
4,296,222	-		BT3337	0.65	-5.3
4,296,302	+		BT3337	0.71	-0.9
4,296,303	-		BT3337	0.71	-0.4
4,296,334	-		BT3337	0.73	-3.3
4,296,405	+		BT3337	0.78	+0.6
4,296,405	+		BT3337	0.78	-1.7
4,296,572	+				-2.4
4,296,577	+				-4.5
4,296,577	+				-0.9
4,296,648	+				+0.6
4,296,648	+				-2.8
4,296,688	+				-1.4
4,296,688	+				-1.7
4,296,689	-				-3.9
4,296,689	-				-7.0
4,296,689	-				-3.2
4,296,690	+				-0.9
4,296,691	-				-6.4
4,296,691	-				-1.7
4,296,692	+				-3.8
4,296,692	+				-2.4
4,296,693	-				-2.2
4,296,726	+				-1.9
4,296,727	-				-5.9
4,296,749	-				-3.8
4,296,759	+				-1.4
4,296,868	-				-5.5
4,296,876	+				-1.4
4,296,894	+				-2.4
4,296,950	-				-1.9
4,297,036	-				+0.6
4,297,057	+		BT3338	0.10	+0.6
4,297,058	-		BT3338	0.10	-0.4
4,297,117	-		BT3338	0.12	-2.5
4,297,118	+		BT3338	0.12	-0.9
4,297,118	+		BT3338	0.12	-4.9
4,297,163	-		BT3338	0.14	-1.9
4,297,163	-		BT3338	0.14	-0.4
4,297,165	-		BT3338	0.14	+0.6
4,297,208	-		BT3338	0.15	-3.5
4,297,252	-		BT3338	0.17	+0.6
4,297,323	+		BT3338	0.19	-1.4
4,297,333	-		BT3338	0.19	-2.4
4,297,364	-		BT3338	0.20	-2.4
4,297,437	+		BT3338	0.22	-1.0
4,297,479	-		BT3338	0.24	-0.4
4,297,513	+		BT3338	0.25	-2.0
4,297,566	+		BT3338	0.26	-1.0
4,297,670	+		BT3338	0.30	-0.4
4,297,671	-		BT3338	0.30	-5.4
4,297,803	+		BT3338	0.34	-2.0
4,297,836	-		BT3338	0.35	+0.6
4,297,846	+		BT3338	0.35	-2.0
4,297,908	+		BT3338	0.37	-4.5
4,297,951	+		BT3338	0.38	-1.0
4,297,952	-		BT3338	0.38	-3.6
4,297,968	+		BT3338	0.39	-4.0
4,297,988	+		BT3338	0.39	-4.3
4,297,989	-		BT3338	0.39	-5.6
4,297,989	-		BT3338	0.39	-4.1
4,298,115	+		BT3338	0.43	-0.4
4,298,155	+		BT3338	0.45	-3.5
4,298,155	+		BT3338	0.45	-4.8
4,298,204	-		BT3338	0.46	-0.4
4,298,250	+		BT3338	0.48	-3.8
4,298,251	-		BT3338	0.48	-2.5
4,298,262	+		BT3338	0.48	-4.2
4,298,263	-		BT3338	0.48	+0.6
4,298,287	+		BT3338	0.49	+0.6
4,298,288	-		BT3338	0.49	+0.6
4,298,356	-		BT3338	0.51	-2.0
4,298,379	-		BT3338	0.52	+0.6
4,298,543	+		BT3338	0.57	-1.4
4,298,551	-		BT3338	0.57	-5.3
4,298,610	+		BT3338	0.59	+0.6
4,298,615	-		BT3338	0.59	-4.2
4,298,670	+		BT3338	0.61	-4.8
4,298,671	-		BT3338	0.61	-5.8
4,298,671	-		BT3338	0.61	+0.6
4,298,671	-		BT3338	0.61	-3.9
4,298,874	+		BT3338	0.67	-3.2
4,298,875	-		BT3338	0.67	-0.4
4,298,875	-		BT3338	0.67	-1.4
4,298,876	+		BT3338	0.67	-1.7
4,298,877	-		BT3338	0.67	-1.4
4,298,877	-		BT3338	0.67	-0.4
4,298,881	+		BT3338	0.67	-1.4
4,299,083	-		BT3338	0.73	-1.4
4,299,119	+		BT3338	0.75	-1.0
4,299,120	-		BT3338	0.75	-2.8
4,299,151	-		BT3338	0.76	-2.4
4,299,166	+		BT3338	0.76	-2.4
4,299,167	-		BT3338	0.76	-1.7
4,299,167	-		BT3338	0.76	-2.2
4,299,246	+		BT3338	0.79	-1.7
4,299,299	-		BT3338	0.80	-2.0
4,299,300	+		BT3338	0.80	-0.4
4,299,325	+		BT3338	0.81	-7.7
4,299,345	+		BT3338	0.82	-4.5
4,299,486	+		BT3338	0.86	-4.0
4,299,488	+		BT3338	0.86	-0.4
4,299,489	-		BT3338	0.86	-0.4
4,299,489	-		BT3338	0.86	-5.0
4,299,489	-		BT3338	0.86	+0.6
4,299,492	+		BT3338	0.86	-2.5
4,299,507	-		BT3338	0.87	-2.0
4,299,517	+		BT3338	0.87	-3.6
4,299,517	+		BT3338	0.87	-2.8
4,299,518	-		BT3338	0.87	-4.0
4,299,580	+		BT3338	0.89	-2.2
4,299,581	-		BT3338	0.89	-3.8
4,299,614	-		BT3338	0.90	-6.5
4,299,631	-				+0.6
4,299,631	-				-6.2
4,299,704	+				-5.2
4,299,704	+				-1.0
4,299,705	-				-1.7
4,299,719	-				-4.5
4,299,784	+				+0.6
4,299,786	+				-1.0
4,299,786	+				-3.8
4,299,789	-				-5.6
4,299,831	-				-3.2
4,299,868	+				-3.4
4,299,873	+				-1.4
4,299,873	+				-3.0
4,299,874	-				-3.0
4,299,874	-				-1.0
4,299,891	+				-0.4
4,299,967	+				-3.8
4,299,972	-				+0.6
4,300,070	+				-3.3
4,300,071	-		BT3339	0.10	-1.0
4,300,123	-		BT3339	0.14	-4.2
4,300,226	-		BT3339	0.23	-1.4
4,300,259	-		BT3339	0.26	-3.3
4,300,261	+		BT3339	0.26	-0.4
4,300,263	+		BT3339	0.26	-2.2
4,300,303	+		BT3339	0.30	+0.6
4,300,304	-		BT3339	0.30	-1.7
4,300,324	+		BT3339	0.32	-1.4
4,300,324	+		BT3339	0.32	-3.4
4,300,336	+		BT3339	0.33	-4.4
4,300,337	-		BT3339	0.33	-2.7
4,300,398	+		BT3339	0.38	-1.0
4,300,504	+		BT3339	0.47	-2.5
4,300,513	-		BT3339	0.48	+0.6
4,300,514	+		BT3339	0.48	-1.7
4,300,514	+		BT3339	0.48	-4.0
4,300,514	+		BT3339	0.48	-2.2
4,300,514	+		BT3339	0.48	-2.0
4,300,515	-		BT3339	0.48	-1.0
4,300,515	-		BT3339	0.48	-5.9
4,300,519	-		BT3339	0.48	-1.0
4,300,520	+		BT3339	0.48	-1.0
4,300,520	+		BT3339	0.48	-2.8
4,300,543	+		BT3339	0.50	-3.0
4,300,543	+		BT3339	0.50	-3.8
4,300,544	-		BT3339	0.50	+0.6
4,300,562	-		BT3339	0.52	-4.8
4,300,571	+		BT3339	0.53	-3.6
4,300,572	-		BT3339	0.53	+0.6
4,300,572	-		BT3339	0.53	-1.4
4,300,607	-		BT3339	0.56	+0.6
4,300,629	-		BT3339	0.57	+0.6
4,300,629	-				-1.0
4,300,796	-		BT3339	0.72	-0.4
4,300,841	+		BT3339	0.76	-0.4
4,300,842	-		BT3339	0.76	+0.6
4,300,854	+		BT3339	0.77	-6.3
4,300,855	-		BT3339	0.77	-1.0
4,300,875	+		BT3339	0.78	-1.4