Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2264

Experiment: Stool_Day8_Mouse7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stool_Day8_Mouse7
2,840,598	-		BT2263	0.35	-2.6
2,840,656	-		BT2263	0.38	-2.5
2,840,656	-		BT2263	0.38	-3.1
2,840,656	-		BT2263	0.38	+0.7
2,840,656	-		BT2263	0.38	-1.6
2,840,687	+		BT2263	0.41	-2.4
2,840,688	-		BT2263	0.41	-0.3
2,840,712	+		BT2263	0.42	-0.3
2,840,713	-		BT2263	0.42	-2.3
2,840,715	+		BT2263	0.42	-4.8
2,840,716	-		BT2263	0.42	-1.3
2,840,753	+		BT2263	0.45	-0.8
2,840,758	+		BT2263	0.45	+0.7
2,840,761	+		BT2263	0.45	-2.3
2,840,809	-		BT2263	0.49	+0.0
2,840,811	+		BT2263	0.49	-1.8
2,840,814	-		BT2263	0.49	-1.4
2,840,814	-		BT2263	0.49	-3.1
2,840,929	+		BT2263	0.57	+0.7
2,840,929	+		BT2263	0.57	-0.3
2,840,954	+		BT2263	0.58	+0.7
2,840,958	+		BT2263	0.59	+0.7
2,841,076	+		BT2263	0.67	-3.0
2,841,077	-		BT2263	0.67	+0.7
2,841,087	+		BT2263	0.67	+0.7
2,841,088	-		BT2263	0.67	-1.6
2,841,089	+		BT2263	0.67	+0.7
2,841,091	+		BT2263	0.68	-2.8
2,841,092	-		BT2263	0.68	-2.4
2,841,153	-		BT2263	0.72	-3.5
2,841,168	+		BT2263	0.73	-0.3
2,841,169	-		BT2263	0.73	-0.3
2,841,171	+		BT2263	0.73	-4.7
2,841,171	+		BT2263	0.73	-0.3
2,841,194	+		BT2263	0.74	-0.8
2,841,195	-		BT2263	0.74	-0.8
2,841,205	+				-1.3
2,841,206	-		BT2263	0.75	-3.2
2,841,210	+		BT2263	0.75	+0.7
2,841,210	+		BT2263	0.75	-1.6
2,841,211	-		BT2263	0.76	-0.8
2,841,211	-		BT2263	0.76	-3.4
2,841,211	-		BT2263	0.76	-4.7
2,841,300	-		BT2263	0.81	-1.6
2,841,330	+		BT2263	0.84	-3.8
2,841,335	+		BT2263	0.84	-4.1
2,841,348	+		BT2263	0.85	-2.6
2,841,349	-		BT2263	0.85	-2.3
2,841,350	+		BT2263	0.85	-1.8
2,841,378	-		BT2263	0.87	-1.3
2,841,378	-		BT2263	0.87	-1.6
2,841,381	-		BT2263	0.87	-0.8
2,841,402	-		BT2263	0.88	-0.3
2,841,448	-				-0.3
2,841,548	-				-2.4
2,841,560	-				-0.3
2,841,560	-				-2.9
2,841,645	-				-0.3
2,841,645	-				-3.1
2,841,653	+				-1.6
2,841,653	+				-3.1
2,841,730	+				-0.3
2,841,743	+				-2.8
2,841,743	+				-0.8
2,841,757	+				-1.3
2,841,757	+				+0.4
2,841,812	-				-0.3
2,841,833	+				-2.4
2,841,891	+		BT2264	0.10	-4.0
2,841,893	+		BT2264	0.10	-4.0
2,841,900	+		BT2264	0.11	-3.8
2,841,910	-		BT2264	0.11	+0.7
2,841,922	-		BT2264	0.11	-1.6
2,841,932	+		BT2264	0.12	-1.6
2,841,933	-		BT2264	0.12	-2.4
2,841,937	-		BT2264	0.12	-2.4
2,841,955	+		BT2264	0.12	-3.0
2,841,956	-		BT2264	0.12	+1.1
2,841,960	+		BT2264	0.13	-1.3
2,842,001	+		BT2264	0.14	-0.8
2,842,001	+		BT2264	0.14	-3.0
2,842,002	-		BT2264	0.14	-2.4
2,842,036	+		BT2264	0.15	-1.3
2,842,038	+		BT2264	0.15	-0.3
2,842,047	+		BT2264	0.15	-4.1
2,842,102	-		BT2264	0.17	-1.6
2,842,109	+		BT2264	0.18	-3.3
2,842,139	+		BT2264	0.19	-2.3
2,842,152	+		BT2264	0.19	-3.7
2,842,208	-		BT2264	0.21	-3.2
2,842,211	-		BT2264	0.21	-3.0
2,842,211	-		BT2264	0.21	-0.3
2,842,216	+		BT2264	0.21	-2.1
2,842,216	-		BT2264	0.21	-3.5
2,842,241	-		BT2264	0.22	+1.7
2,842,283	+		BT2264	0.23	-3.8
2,842,310	+		BT2264	0.24	-0.8
2,842,320	+		BT2264	0.25	-3.9
2,842,321	-		BT2264	0.25	-1.8
2,842,356	+		BT2264	0.26	-3.2
2,842,356	+		BT2264	0.26	-5.0
2,842,539	+		BT2264	0.32	-2.5
2,842,545	-		BT2264	0.32	-1.3
2,842,549	+		BT2264	0.32	-0.3
2,842,549	+		BT2264	0.32	-2.6
2,842,549	+		BT2264	0.32	+0.2
2,842,624	+		BT2264	0.35	-0.8
2,842,629	+		BT2264	0.35	+0.7
2,842,629	+		BT2264	0.35	-1.3
2,842,703	-		BT2264	0.38	-1.3
2,842,725	-		BT2264	0.38	-0.8
2,842,742	+		BT2264	0.39	-2.3
2,842,742	+		BT2264	0.39	-1.8
2,842,825	+		BT2264	0.42	-4.3
2,842,826	-		BT2264	0.42	-0.8
2,842,862	+		BT2264	0.43	-3.3
2,842,863	-		BT2264	0.43	-0.3
2,842,863	-		BT2264	0.43	-0.8
2,843,002	+		BT2264	0.48	-1.8
2,843,003	-		BT2264	0.48	-2.3
2,843,003	-		BT2264	0.48	-1.6
2,843,003	-		BT2264	0.48	-2.4
2,843,006	-		BT2264	0.48	-2.6
2,843,008	-		BT2264	0.48	-3.3
2,843,044	-		BT2264	0.49	-4.0
2,843,078	+				-0.3
2,843,088	+		BT2264	0.51	-1.6
2,843,125	-		BT2264	0.52	-0.8
2,843,160	+		BT2264	0.53	+0.7
2,843,191	+		BT2264	0.54	-1.8
2,843,204	+		BT2264	0.55	+0.7
2,843,257	-		BT2264	0.56	-2.5
2,843,271	-		BT2264	0.57	-0.8
2,843,274	-		BT2264	0.57	-2.6
2,843,283	-		BT2264	0.57	+0.2
2,843,320	-		BT2264	0.59	-0.3
2,843,320	-		BT2264	0.59	-1.8
2,843,320	-		BT2264	0.59	-1.7
2,843,323	-		BT2264	0.59	-0.3
2,843,339	+		BT2264	0.59	-3.0
2,843,343	+		BT2264	0.59	-2.3
2,843,354	+		BT2264	0.60	-2.5
2,843,391	-		BT2264	0.61	+0.7
2,843,409	-		BT2264	0.62	-0.3
2,843,435	+		BT2264	0.62	-4.4
2,843,436	-		BT2264	0.63	-0.3
2,843,436	-		BT2264	0.63	-0.3
2,843,436	-		BT2264	0.63	-0.8
2,843,439	-		BT2264	0.63	-1.3
2,843,448	+		BT2264	0.63	-1.6
2,843,466	-		BT2264	0.64	-2.3
2,843,542	+		BT2264	0.66	-0.3
2,843,552	-		BT2264	0.66	-0.3
2,843,586	+		BT2264	0.68	-3.4
2,843,604	-		BT2264	0.68	+0.7
2,843,664	+		BT2264	0.70	-5.9
2,843,666	+		BT2264	0.70	-1.6
2,843,670	+		BT2264	0.70	-2.8
2,843,670	+		BT2264	0.70	-2.6
2,843,701	-		BT2264	0.71	-0.8
2,843,701	-		BT2264	0.71	-1.1
2,843,728	+		BT2264	0.72	-3.3
2,843,728	+		BT2264	0.72	-0.8
2,843,728	+		BT2264	0.72	-1.3
2,843,728	+		BT2264	0.72	-0.3
2,843,779	-		BT2264	0.74	-3.5
2,843,832	-		BT2264	0.76	-2.4
2,843,858	+		BT2264	0.77	-2.6
2,843,858	+		BT2264	0.77	-0.3
2,843,859	-		BT2264	0.77	-1.3
2,843,925	+		BT2264	0.79	-1.3
2,843,925	+		BT2264	0.79	-3.0
2,844,006	+		BT2264	0.82	-2.7
2,844,008	+		BT2264	0.82	+0.7
2,844,051	+		BT2264	0.83	-2.3
2,844,051	+		BT2264	0.83	-3.5
2,844,052	-		BT2264	0.83	-3.3
2,844,061	+		BT2264	0.84	-2.3
2,844,062	-		BT2264	0.84	-0.3
2,844,087	-		BT2264	0.85	-3.2
2,844,118	-				+0.7
2,844,173	+		BT2264	0.87	-4.5
2,844,195	+		BT2264	0.88	-0.8
2,844,196	-		BT2264	0.88	-2.4
2,844,196	-		BT2264	0.88	-1.6
2,844,201	-		BT2264	0.88	-0.3
2,844,202	+		BT2264	0.88	-1.6
2,844,203	-		BT2264	0.88	-0.8
2,844,208	-		BT2264	0.89	-2.9
2,844,213	+		BT2264	0.89	-4.3
2,844,213	+		BT2264	0.89	-2.6
2,844,224	-		BT2264	0.89	-0.8
2,844,239	+		BT2264	0.90	-2.1
2,844,239	+		BT2264	0.90	+0.7
2,844,239	+		BT2264	0.90	-1.3
2,844,239	+		BT2264	0.90	-0.8
2,844,239	+		BT2264	0.90	-4.0
2,844,240	-		BT2264	0.90	+0.7
2,844,241	+		BT2264	0.90	+0.7
2,844,295	-				-2.4
2,844,331	+				-1.6
2,844,419	+				-3.5
2,844,425	-				-2.3
2,844,459	+				-1.8
2,844,499	+				+0.7
2,844,500	-				-4.1
2,844,519	+				-1.1
2,844,520	-				-2.1
2,844,607	-		BT2265	0.40	-0.3
2,844,622	-		BT2265	0.48	-2.3
2,844,638	+		BT2265	0.57	-3.0
2,844,656	+		BT2265	0.67	-2.6
2,844,690	+		BT2265	0.85	+1.7
2,844,692	+		BT2265	0.86	-2.7
2,844,761	-				-0.3
2,844,811	+				-0.3
2,844,811	+				-1.3
2,844,831	-				-1.3
2,844,879	+				+0.7
2,844,880	-				-2.6
2,844,909	-				-2.6
2,844,913	-				-2.7
2,845,002	+				-0.8
2,845,002	+				-2.5
2,845,032	+				-2.0
2,845,128	-				-1.7
2,845,146	-				-0.8
2,845,266	+		BT2266	0.55	-1.8
2,845,267	-		BT2266	0.55	-5.6
2,845,271	-		BT2266	0.57	-2.1
2,845,272	+		BT2266	0.58	-0.3
2,845,275	+		BT2266	0.59	-1.4
2,845,338	-				-0.3
2,845,349	-				+0.7
2,845,435	+				-0.6
2,845,435	+				-1.3
2,845,449	+				-4.2
2,845,477	+				-4.6
2,845,477	+				+0.7
2,845,478	-				-0.1
2,845,492	+				-1.6
2,845,502	+				-4.0
2,845,502	+				+0.7