Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2263

Experiment: Stool_Day8_Mouse7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stool_Day8_Mouse7
2,839,114	-		BT2261	0.53	+1.3
2,839,159	+		BT2261	0.62	-4.4
2,839,159	+		BT2261	0.62	-0.3
2,839,160	-		BT2261	0.62	-1.6
2,839,163	+		BT2261	0.63	-1.8
2,839,268	+		BT2261	0.84	-0.3
2,839,269	-		BT2261	0.84	-2.3
2,839,308	-				-2.6
2,839,337	+				-3.1
2,839,338	-				-5.0
2,839,338	-				-3.7
2,839,338	-				-3.7
2,839,349	+				-3.3
2,839,356	-				-0.8
2,839,446	+		BT2262	0.12	-0.9
2,839,446	+		BT2262	0.12	-3.6
2,839,447	-		BT2262	0.13	-3.2
2,839,450	-		BT2262	0.13	-0.3
2,839,503	+		BT2262	0.21	-3.7
2,839,504	-		BT2262	0.21	-1.6
2,839,513	-		BT2262	0.22	-1.3
2,839,548	-		BT2262	0.27	-3.5
2,839,674	+		BT2262	0.45	-3.2
2,839,694	-		BT2262	0.48	-1.3
2,839,701	-		BT2262	0.49	-5.9
2,839,729	-		BT2262	0.53	-1.3
2,839,731	+		BT2262	0.54	-3.4
2,839,732	-		BT2262	0.54	-3.5
2,839,732	-		BT2262	0.54	+0.7
2,839,742	+		BT2262	0.55	-2.3
2,839,742	+		BT2262	0.55	+0.7
2,839,743	-		BT2262	0.55	+0.7
2,839,745	-		BT2262	0.56	-0.9
2,839,784	+		BT2262	0.61	-0.3
2,839,784	+		BT2262	0.61	-2.4
2,839,793	+		BT2262	0.62	-0.9
2,839,795	+		BT2262	0.63	-4.1
2,839,833	+		BT2262	0.68	+0.4
2,839,857	+		BT2262	0.72	-1.0
2,839,860	+		BT2262	0.72	-1.6
2,839,886	+		BT2262	0.76	-1.9
2,839,961	+		BT2262	0.87	+0.1
2,840,024	-				-3.8
2,840,024	-				-2.6
2,840,026	+				+0.7
2,840,027	-				+0.7
2,840,027	-				-1.6
2,840,041	+				-0.3
2,840,130	+				-2.3
2,840,155	+				-0.3
2,840,163	-				+0.7
2,840,169	+				-1.6
2,840,169	+				-0.3
2,840,202	+				-1.3
2,840,203	-				-2.0
2,840,203	-				-0.9
2,840,219	-				-5.1
2,840,234	+		BT2263	0.10	-3.9
2,840,235	-		BT2263	0.10	-0.3
2,840,236	+		BT2263	0.10	-1.1
2,840,237	-		BT2263	0.10	-3.9
2,840,254	+		BT2263	0.12	+0.1
2,840,270	+		BT2263	0.13	-3.8
2,840,358	+		BT2263	0.19	-0.3
2,840,359	-		BT2263	0.19	-0.6
2,840,360	+		BT2263	0.19	-3.5
2,840,360	+		BT2263	0.19	-2.7
2,840,361	-		BT2263	0.19	+0.7
2,840,388	+		BT2263	0.21	-2.3
2,840,483	+		BT2263	0.27	-1.6
2,840,525	+		BT2263	0.30	-1.8
2,840,526	-		BT2263	0.30	-1.3
2,840,527	+		BT2263	0.30	+0.7
2,840,527	+		BT2263	0.30	-2.1
2,840,536	+		BT2263	0.30	-3.3
2,840,571	-		BT2263	0.33	-4.1
2,840,598	-		BT2263	0.35	-2.6
2,840,656	-		BT2263	0.38	-2.5
2,840,656	-		BT2263	0.38	-3.1
2,840,656	-		BT2263	0.38	+0.7
2,840,656	-		BT2263	0.38	-1.6
2,840,687	+		BT2263	0.41	-2.4
2,840,688	-		BT2263	0.41	-0.3
2,840,712	+		BT2263	0.42	-0.3
2,840,713	-		BT2263	0.42	-2.3
2,840,715	+		BT2263	0.42	-4.8
2,840,716	-		BT2263	0.42	-1.3
2,840,753	+		BT2263	0.45	-0.8
2,840,758	+		BT2263	0.45	+0.7
2,840,761	+		BT2263	0.45	-2.3
2,840,809	-		BT2263	0.49	+0.0
2,840,811	+		BT2263	0.49	-1.8
2,840,814	-		BT2263	0.49	-1.4
2,840,814	-		BT2263	0.49	-3.1
2,840,929	+		BT2263	0.57	+0.7
2,840,929	+		BT2263	0.57	-0.3
2,840,954	+		BT2263	0.58	+0.7
2,840,958	+		BT2263	0.59	+0.7
2,841,076	+		BT2263	0.67	-3.0
2,841,077	-		BT2263	0.67	+0.7
2,841,087	+		BT2263	0.67	+0.7
2,841,088	-		BT2263	0.67	-1.6
2,841,089	+		BT2263	0.67	+0.7
2,841,091	+		BT2263	0.68	-2.8
2,841,092	-		BT2263	0.68	-2.4
2,841,153	-		BT2263	0.72	-3.5
2,841,168	+		BT2263	0.73	-0.3
2,841,169	-		BT2263	0.73	-0.3
2,841,171	+		BT2263	0.73	-4.7
2,841,171	+		BT2263	0.73	-0.3
2,841,194	+		BT2263	0.74	-0.8
2,841,195	-		BT2263	0.74	-0.8
2,841,205	+				-1.3
2,841,206	-		BT2263	0.75	-3.2
2,841,210	+		BT2263	0.75	+0.7
2,841,210	+		BT2263	0.75	-1.6
2,841,211	-		BT2263	0.76	-0.8
2,841,211	-		BT2263	0.76	-3.4
2,841,211	-		BT2263	0.76	-4.7
2,841,300	-		BT2263	0.81	-1.6
2,841,330	+		BT2263	0.84	-3.8
2,841,335	+		BT2263	0.84	-4.1
2,841,348	+		BT2263	0.85	-2.6
2,841,349	-		BT2263	0.85	-2.3
2,841,350	+		BT2263	0.85	-1.8
2,841,378	-		BT2263	0.87	-1.3
2,841,378	-		BT2263	0.87	-1.6
2,841,381	-		BT2263	0.87	-0.8
2,841,402	-		BT2263	0.88	-0.3
2,841,448	-				-0.3
2,841,548	-				-2.4
2,841,560	-				-0.3
2,841,560	-				-2.9
2,841,645	-				-0.3
2,841,645	-				-3.1
2,841,653	+				-1.6
2,841,653	+				-3.1
2,841,730	+				-0.3
2,841,743	+				-2.8
2,841,743	+				-0.8
2,841,757	+				-1.3
2,841,757	+				+0.4
2,841,812	-				-0.3
2,841,833	+				-2.4
2,841,891	+		BT2264	0.10	-4.0
2,841,893	+		BT2264	0.10	-4.0
2,841,900	+		BT2264	0.11	-3.8
2,841,910	-		BT2264	0.11	+0.7
2,841,922	-		BT2264	0.11	-1.6
2,841,932	+		BT2264	0.12	-1.6
2,841,933	-		BT2264	0.12	-2.4
2,841,937	-		BT2264	0.12	-2.4
2,841,955	+		BT2264	0.12	-3.0
2,841,956	-		BT2264	0.12	+1.1
2,841,960	+		BT2264	0.13	-1.3
2,842,001	+		BT2264	0.14	-0.8
2,842,001	+		BT2264	0.14	-3.0
2,842,002	-		BT2264	0.14	-2.4
2,842,036	+		BT2264	0.15	-1.3
2,842,038	+		BT2264	0.15	-0.3
2,842,047	+		BT2264	0.15	-4.1
2,842,102	-		BT2264	0.17	-1.6
2,842,109	+		BT2264	0.18	-3.3
2,842,139	+		BT2264	0.19	-2.3
2,842,152	+		BT2264	0.19	-3.7
2,842,208	-		BT2264	0.21	-3.2
2,842,211	-		BT2264	0.21	-3.0
2,842,211	-		BT2264	0.21	-0.3
2,842,216	+		BT2264	0.21	-2.1
2,842,216	-		BT2264	0.21	-3.5
2,842,241	-		BT2264	0.22	+1.7
2,842,283	+		BT2264	0.23	-3.8
2,842,310	+		BT2264	0.24	-0.8
2,842,320	+		BT2264	0.25	-3.9
2,842,321	-		BT2264	0.25	-1.8
2,842,356	+		BT2264	0.26	-3.2
2,842,356	+		BT2264	0.26	-5.0
2,842,539	+		BT2264	0.32	-2.5
2,842,545	-		BT2264	0.32	-1.3
2,842,549	+		BT2264	0.32	-0.3
2,842,549	+		BT2264	0.32	-2.6
2,842,549	+		BT2264	0.32	+0.2