Experiment: Stool_Day8_Mouse7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0560 and BT0561 are separated by 16 nucleotides BT0561 and BT0562 overlap by 22 nucleotides
BT0560: BT0560 - outer membrane efflux protein (NCBI ptt file), at 695,883 to 697,112
BT0560
BT0561: BT0561 - conserved hypothetical protein, putative membrane protein (NCBI ptt file), at 697,129 to 698,043
BT0561
BT0562: BT0562 - putative ABC transporter ATP-binding protein (NCBI ptt file), at 698,022 to 699,491
BT0562
Position (kb) 697
698
699 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 696.246 kb on - strand, within BT0560 at 696.250 kb on - strand, within BT0560 at 696.474 kb on + strand, within BT0560 at 696.526 kb on + strand, within BT0560 at 696.687 kb on + strand, within BT0560 at 696.735 kb on + strand, within BT0560 at 697.103 kb on + strand at 697.113 kb on + strand at 697.238 kb on - strand, within BT0561 at 697.346 kb on + strand, within BT0561 at 697.346 kb on + strand, within BT0561 at 697.347 kb on - strand, within BT0561 at 697.421 kb on + strand, within BT0561 at 697.444 kb on - strand, within BT0561 at 697.625 kb on + strand, within BT0561 at 697.760 kb on + strand, within BT0561 at 697.772 kb on - strand, within BT0561 at 697.789 kb on - strand, within BT0561 at 697.958 kb on - strand at 698.005 kb on - strand at 698.005 kb on - strand at 698.009 kb on - strand at 698.080 kb on + strand at 698.201 kb on + strand, within BT0562 at 698.273 kb on + strand, within BT0562 at 698.388 kb on + strand, within BT0562 at 698.389 kb on - strand, within BT0562 at 698.514 kb on - strand, within BT0562 at 698.606 kb on + strand, within BT0562 at 698.607 kb on - strand, within BT0562 at 698.877 kb on - strand, within BT0562 at 698.894 kb on + strand, within BT0562 at 698.946 kb on + strand, within BT0562 at 698.994 kb on - strand, within BT0562
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day8_Mouse7 remove 696,246 - BT0560 0.30 -0.1 696,250 - BT0560 0.30 -0.6 696,474 + BT0560 0.48 +0.7 696,526 + BT0560 0.52 +0.7 696,687 + BT0560 0.65 -1.6 696,735 + BT0560 0.69 +0.7 697,103 + -0.9 697,113 + -1.1 697,238 - BT0561 0.12 -2.6 697,346 + BT0561 0.24 -2.3 697,346 + BT0561 0.24 +0.1 697,347 - BT0561 0.24 -2.5 697,421 + BT0561 0.32 -0.9 697,444 - BT0561 0.34 -2.6 697,625 + BT0561 0.54 -1.6 697,760 + BT0561 0.69 -1.9 697,772 - BT0561 0.70 +0.1 697,789 - BT0561 0.72 -2.5 697,958 - +0.7 698,005 - -0.4 698,005 - -1.3 698,009 - +0.7 698,080 + -2.7 698,201 + BT0562 0.12 -0.3 698,273 + BT0562 0.17 -1.3 698,388 + BT0562 0.25 -1.3 698,389 - BT0562 0.25 -0.3 698,514 - BT0562 0.33 -3.5 698,606 + BT0562 0.40 -1.1 698,607 - BT0562 0.40 +1.1 698,877 - BT0562 0.58 -2.2 698,894 + BT0562 0.59 -1.6 698,946 + BT0562 0.63 +1.0 698,994 - BT0562 0.66 -2.9
Or see this region's nucleotide sequence