Experiment: Stool_Day8_Mouse7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0525 and BT0526 are separated by 212 nucleotides BT0526 and BT0527 are separated by 265 nucleotides
BT0525: BT0525 - outer membrane protein, function unknown (NCBI ptt file), at 647,028 to 649,490
BT0525
BT0526: BT0526 - L-asparaginase I (NCBI ptt file), at 649,703 to 650,743
BT0526
BT0527: BT0527 - tryptophan synthase alpha chain (NCBI ptt file), at 651,009 to 651,779
BT0527
Position (kb) 649
650
651 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 648.807 kb on + strand, within BT0525 at 648.808 kb on - strand, within BT0525 at 648.852 kb on - strand, within BT0525 at 648.852 kb on - strand, within BT0525 at 648.881 kb on + strand, within BT0525 at 649.001 kb on - strand, within BT0525 at 649.064 kb on + strand, within BT0525 at 649.065 kb on - strand, within BT0525 at 649.150 kb on + strand, within BT0525 at 649.151 kb on - strand, within BT0525 at 649.228 kb on - strand, within BT0525 at 649.228 kb on - strand, within BT0525 at 649.308 kb on + strand at 649.309 kb on - strand at 649.317 kb on - strand at 649.328 kb on + strand at 649.328 kb on + strand at 649.329 kb on - strand at 649.329 kb on - strand at 649.400 kb on - strand at 649.402 kb on - strand at 649.432 kb on - strand at 649.441 kb on - strand at 649.444 kb on - strand at 649.460 kb on + strand at 649.460 kb on + strand at 649.490 kb on + strand at 649.532 kb on - strand at 649.912 kb on + strand, within BT0526 at 650.075 kb on + strand, within BT0526 at 650.103 kb on + strand, within BT0526 at 650.143 kb on + strand, within BT0526 at 650.164 kb on + strand, within BT0526 at 650.175 kb on - strand, within BT0526 at 650.216 kb on - strand, within BT0526 at 650.243 kb on - strand, within BT0526 at 650.243 kb on - strand, within BT0526 at 650.282 kb on + strand, within BT0526 at 650.283 kb on - strand, within BT0526 at 650.296 kb on + strand, within BT0526 at 650.464 kb on + strand, within BT0526 at 650.465 kb on - strand, within BT0526 at 650.509 kb on + strand, within BT0526 at 650.511 kb on + strand, within BT0526 at 650.512 kb on - strand, within BT0526 at 650.526 kb on - strand, within BT0526 at 650.587 kb on - strand, within BT0526 at 650.602 kb on - strand, within BT0526 at 650.602 kb on - strand, within BT0526 at 650.778 kb on + strand at 650.785 kb on + strand at 650.871 kb on - strand at 650.978 kb on + strand at 650.978 kb on + strand at 651.010 kb on + strand at 651.096 kb on - strand, within BT0527 at 651.132 kb on - strand, within BT0527 at 651.147 kb on - strand, within BT0527 at 651.182 kb on + strand, within BT0527 at 651.183 kb on - strand, within BT0527 at 651.183 kb on - strand, within BT0527 at 651.243 kb on - strand, within BT0527 at 651.264 kb on - strand, within BT0527 at 651.264 kb on - strand, within BT0527 at 651.265 kb on + strand, within BT0527 at 651.266 kb on - strand, within BT0527 at 651.266 kb on - strand, within BT0527 at 651.473 kb on + strand, within BT0527 at 651.474 kb on - strand, within BT0527 at 651.477 kb on - strand, within BT0527 at 651.484 kb on - strand, within BT0527 at 651.484 kb on - strand, within BT0527 at 651.498 kb on + strand, within BT0527 at 651.514 kb on - strand, within BT0527 at 651.514 kb on - strand, within BT0527 at 651.574 kb on - strand, within BT0527 at 651.674 kb on + strand, within BT0527
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day8_Mouse7 remove 648,807 + BT0525 0.72 +1.7 648,808 - BT0525 0.72 -0.9 648,852 - BT0525 0.74 -0.6 648,852 - BT0525 0.74 +0.1 648,881 + BT0525 0.75 +0.7 649,001 - BT0525 0.80 -1.9 649,064 + BT0525 0.83 -1.0 649,065 - BT0525 0.83 -0.2 649,150 + BT0525 0.86 -0.5 649,151 - BT0525 0.86 -0.9 649,228 - BT0525 0.89 -0.9 649,228 - BT0525 0.89 +0.6 649,308 + +0.7 649,309 - -0.3 649,317 - -0.3 649,328 + +0.7 649,328 + -2.1 649,329 - +0.1 649,329 - -1.7 649,400 - +0.7 649,402 - -2.8 649,432 - -0.3 649,441 - -0.7 649,444 - +0.7 649,460 + -0.3 649,460 + -1.6 649,490 + +0.7 649,532 - +0.7 649,912 + BT0526 0.20 -2.4 650,075 + BT0526 0.36 -2.4 650,103 + BT0526 0.38 -0.9 650,143 + BT0526 0.42 -0.9 650,164 + BT0526 0.44 -0.3 650,175 - BT0526 0.45 -3.3 650,216 - BT0526 0.49 -3.8 650,243 - BT0526 0.52 -1.6 650,243 - BT0526 0.52 -0.6 650,282 + BT0526 0.56 -2.3 650,283 - BT0526 0.56 -0.3 650,296 + BT0526 0.57 -0.9 650,464 + BT0526 0.73 -0.3 650,465 - BT0526 0.73 -1.9 650,509 + BT0526 0.77 +0.7 650,511 + BT0526 0.78 +0.7 650,512 - BT0526 0.78 -1.3 650,526 - BT0526 0.79 -2.1 650,587 - BT0526 0.85 -2.5 650,602 - BT0526 0.86 -0.0 650,602 - BT0526 0.86 -0.9 650,778 + -1.6 650,785 + -2.5 650,871 - +0.7 650,978 + -0.9 650,978 + -1.3 651,010 + +1.0 651,096 - BT0527 0.11 +0.7 651,132 - BT0527 0.16 -2.3 651,147 - BT0527 0.18 +0.7 651,182 + BT0527 0.22 -0.9 651,183 - BT0527 0.23 +0.7 651,183 - BT0527 0.23 -0.6 651,243 - BT0527 0.30 -2.3 651,264 - BT0527 0.33 -0.9 651,264 - BT0527 0.33 +0.7 651,265 + BT0527 0.33 -2.3 651,266 - BT0527 0.33 -0.6 651,266 - BT0527 0.33 -0.9 651,473 + BT0527 0.60 -0.5 651,474 - BT0527 0.60 +0.7 651,477 - BT0527 0.61 -0.3 651,484 - BT0527 0.62 -0.9 651,484 - BT0527 0.62 +0.1 651,498 + BT0527 0.63 -1.9 651,514 - BT0527 0.65 +0.7 651,514 - BT0527 0.65 -2.5 651,574 - BT0527 0.73 -1.3 651,674 + BT0527 0.86 -0.5
Or see this region's nucleotide sequence