Experiment: Stool_Day8_Mouse7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0485 and BT0486 are separated by 201 nucleotides BT0486 and BT0487 are separated by 25 nucleotides
BT0485: BT0485 - transposase (NCBI ptt file), at 600,487 to 601,482
BT0485
BT0486: BT0486 - altronate hydrolase (NCBI ptt file), at 601,684 to 603,174
BT0486
BT0487: BT0487 - transcriptional regulator (NCBI ptt file), at 603,200 to 604,264
BT0487
Position (kb) 601
602
603
604 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 601.659 kb on - strand at 601.686 kb on - strand at 601.763 kb on - strand at 601.763 kb on - strand at 601.943 kb on - strand, within BT0486 at 601.948 kb on - strand, within BT0486 at 601.948 kb on - strand, within BT0486 at 601.971 kb on + strand, within BT0486 at 601.975 kb on - strand, within BT0486 at 601.975 kb on - strand, within BT0486 at 602.063 kb on + strand, within BT0486 at 602.181 kb on - strand, within BT0486 at 602.207 kb on - strand, within BT0486 at 602.298 kb on + strand, within BT0486 at 602.450 kb on - strand, within BT0486 at 602.450 kb on - strand, within BT0486 at 602.463 kb on + strand, within BT0486 at 602.532 kb on - strand, within BT0486 at 602.532 kb on - strand, within BT0486 at 602.597 kb on - strand, within BT0486 at 602.625 kb on + strand, within BT0486 at 602.682 kb on - strand, within BT0486 at 602.779 kb on + strand, within BT0486 at 602.845 kb on - strand, within BT0486 at 602.895 kb on - strand, within BT0486 at 602.898 kb on + strand, within BT0486 at 603.072 kb on + strand at 603.073 kb on - strand at 603.157 kb on + strand at 603.201 kb on + strand at 603.213 kb on + strand at 603.217 kb on - strand at 603.795 kb on - strand, within BT0487 at 603.809 kb on + strand, within BT0487 at 603.936 kb on + strand, within BT0487
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day8_Mouse7 remove 601,659 - +2.8 601,686 - -0.2 601,763 - -1.5 601,763 - -0.2 601,943 - BT0486 0.17 -0.2 601,948 - BT0486 0.18 -1.4 601,948 - BT0486 0.18 -0.8 601,971 + BT0486 0.19 -1.9 601,975 - BT0486 0.20 -4.1 601,975 - BT0486 0.20 -4.0 602,063 + BT0486 0.25 -0.8 602,181 - BT0486 0.33 -1.3 602,207 - BT0486 0.35 -1.5 602,298 + BT0486 0.41 -0.2 602,450 - BT0486 0.51 +0.8 602,450 - BT0486 0.51 -1.6 602,463 + BT0486 0.52 -4.6 602,532 - BT0486 0.57 -0.8 602,532 - BT0486 0.57 -1.9 602,597 - BT0486 0.61 -2.2 602,625 + BT0486 0.63 -1.5 602,682 - BT0486 0.67 -2.2 602,779 + BT0486 0.73 -1.8 602,845 - BT0486 0.78 -0.8 602,895 - BT0486 0.81 -2.1 602,898 + BT0486 0.81 -0.8 603,072 + -2.3 603,073 - -1.2 603,157 + -2.9 603,201 + -1.1 603,213 + -1.2 603,217 - +0.8 603,795 - BT0487 0.56 -0.2 603,809 + BT0487 0.57 -0.2 603,936 + BT0487 0.69 +0.8
Or see this region's nucleotide sequence