Experiment: Stool_Day8_Mouse7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0262 and BT0263 are separated by 95 nucleotides BT0263 and BT0264 are separated by 125 nucleotides
BT0262: BT0262 - hypothetical protein (NCBI ptt file), at 292,568 to 293,203
BT0262
BT0263: BT0263 - hypothetical protein (NCBI ptt file), at 293,299 to 294,711
BT0263
BT0264: BT0264 - conserved hypothetical protein (NCBI ptt file), at 294,837 to 296,585
BT0264
Position (kb) 293
294
295 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 292.343 kb on + strand at 292.520 kb on - strand at 292.520 kb on - strand at 292.687 kb on - strand, within BT0262 at 292.687 kb on - strand, within BT0262 at 292.691 kb on - strand, within BT0262 at 292.760 kb on - strand, within BT0262 at 292.915 kb on - strand, within BT0262 at 292.955 kb on - strand, within BT0262 at 292.955 kb on - strand, within BT0262 at 292.957 kb on - strand, within BT0262 at 292.957 kb on - strand, within BT0262 at 292.960 kb on + strand, within BT0262 at 293.006 kb on + strand, within BT0262 at 293.008 kb on + strand, within BT0262 at 293.053 kb on - strand, within BT0262 at 293.053 kb on - strand, within BT0262 at 293.062 kb on + strand, within BT0262 at 293.103 kb on + strand, within BT0262 at 293.126 kb on - strand, within BT0262 at 293.126 kb on - strand, within BT0262 at 293.128 kb on - strand, within BT0262 at 293.151 kb on - strand at 293.217 kb on + strand at 293.245 kb on - strand at 293.250 kb on + strand at 293.256 kb on + strand at 293.339 kb on - strand at 293.419 kb on + strand at 293.484 kb on + strand, within BT0263 at 293.484 kb on + strand, within BT0263 at 293.508 kb on + strand, within BT0263 at 293.509 kb on - strand, within BT0263 at 293.552 kb on + strand, within BT0263 at 293.586 kb on - strand, within BT0263 at 293.589 kb on - strand, within BT0263 at 293.634 kb on + strand, within BT0263 at 293.722 kb on - strand, within BT0263 at 293.769 kb on + strand, within BT0263 at 293.885 kb on - strand, within BT0263 at 293.904 kb on + strand, within BT0263 at 293.904 kb on + strand, within BT0263 at 293.969 kb on - strand, within BT0263 at 293.978 kb on + strand, within BT0263 at 293.978 kb on + strand, within BT0263 at 293.979 kb on - strand, within BT0263 at 294.008 kb on - strand, within BT0263 at 294.032 kb on - strand, within BT0263 at 294.036 kb on + strand, within BT0263 at 294.046 kb on + strand, within BT0263 at 294.047 kb on - strand, within BT0263 at 294.064 kb on - strand, within BT0263 at 294.102 kb on + strand, within BT0263 at 294.102 kb on + strand, within BT0263 at 294.105 kb on - strand, within BT0263 at 294.258 kb on - strand, within BT0263 at 294.392 kb on + strand, within BT0263 at 294.468 kb on + strand, within BT0263 at 294.600 kb on + strand at 294.600 kb on + strand at 294.601 kb on - strand at 294.692 kb on + strand at 294.706 kb on + strand at 294.707 kb on - strand at 294.710 kb on - strand at 294.728 kb on + strand at 294.733 kb on - strand at 294.794 kb on + strand at 294.941 kb on - strand at 294.946 kb on + strand at 294.976 kb on - strand at 294.997 kb on - strand at 295.053 kb on - strand, within BT0264 at 295.134 kb on + strand, within BT0264 at 295.145 kb on + strand, within BT0264 at 295.148 kb on - strand, within BT0264 at 295.190 kb on + strand, within BT0264 at 295.197 kb on + strand, within BT0264 at 295.203 kb on - strand, within BT0264 at 295.276 kb on - strand, within BT0264 at 295.307 kb on + strand, within BT0264 at 295.308 kb on - strand, within BT0264 at 295.311 kb on - strand, within BT0264 at 295.311 kb on - strand, within BT0264 at 295.342 kb on + strand, within BT0264 at 295.450 kb on - strand, within BT0264 at 295.508 kb on + strand, within BT0264 at 295.526 kb on + strand, within BT0264 at 295.526 kb on + strand, within BT0264 at 295.616 kb on - strand, within BT0264 at 295.680 kb on + strand, within BT0264
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day8_Mouse7 remove 292,343 + +0.3 292,520 - -3.8 292,520 - -0.7 292,687 - BT0262 0.19 +2.4 292,687 - BT0262 0.19 -1.5 292,691 - BT0262 0.19 -0.9 292,760 - BT0262 0.30 -2.1 292,915 - BT0262 0.55 +0.7 292,955 - BT0262 0.61 -1.9 292,955 - BT0262 0.61 -1.3 292,957 - BT0262 0.61 -3.0 292,957 - BT0262 0.61 -1.3 292,960 + BT0262 0.62 +2.3 293,006 + BT0262 0.69 +1.7 293,008 + BT0262 0.69 -0.7 293,053 - BT0262 0.76 -1.6 293,053 - BT0262 0.76 -0.1 293,062 + BT0262 0.78 +0.7 293,103 + BT0262 0.84 -0.3 293,126 - BT0262 0.88 -0.3 293,126 - BT0262 0.88 -0.3 293,128 - BT0262 0.88 -0.5 293,151 - -1.1 293,217 + +0.9 293,245 - +0.7 293,250 + -0.9 293,256 + -2.5 293,339 - -1.3 293,419 + +1.7 293,484 + BT0263 0.13 -2.0 293,484 + BT0263 0.13 -0.6 293,508 + BT0263 0.15 -1.3 293,509 - BT0263 0.15 -0.9 293,552 + BT0263 0.18 +0.7 293,586 - BT0263 0.20 -1.6 293,589 - BT0263 0.21 -1.5 293,634 + BT0263 0.24 +0.7 293,722 - BT0263 0.30 -2.2 293,769 + BT0263 0.33 -1.6 293,885 - BT0263 0.41 -1.4 293,904 + BT0263 0.43 -1.8 293,904 + BT0263 0.43 -3.6 293,969 - BT0263 0.47 -0.9 293,978 + BT0263 0.48 -0.3 293,978 + BT0263 0.48 +0.1 293,979 - BT0263 0.48 -0.9 294,008 - BT0263 0.50 -1.3 294,032 - BT0263 0.52 -0.3 294,036 + BT0263 0.52 -0.3 294,046 + BT0263 0.53 -0.5 294,047 - BT0263 0.53 +0.1 294,064 - BT0263 0.54 -2.5 294,102 + BT0263 0.57 -3.6 294,102 + BT0263 0.57 -0.3 294,105 - BT0263 0.57 -1.5 294,258 - BT0263 0.68 -1.6 294,392 + BT0263 0.77 -0.3 294,468 + BT0263 0.83 +0.5 294,600 + -0.9 294,600 + -2.5 294,601 - -1.9 294,692 + -0.9 294,706 + +0.7 294,707 - -0.9 294,710 - -0.2 294,728 + -0.9 294,733 - -0.9 294,794 + -2.1 294,941 - +1.7 294,946 + -0.3 294,976 - -1.1 294,997 - -1.0 295,053 - BT0264 0.12 -0.9 295,134 + BT0264 0.17 -2.0 295,145 + BT0264 0.18 +1.7 295,148 - BT0264 0.18 +0.3 295,190 + BT0264 0.20 -0.3 295,197 + BT0264 0.21 -2.3 295,203 - BT0264 0.21 -2.6 295,276 - BT0264 0.25 +1.1 295,307 + BT0264 0.27 -2.5 295,308 - BT0264 0.27 -0.3 295,311 - BT0264 0.27 -1.9 295,311 - BT0264 0.27 +0.1 295,342 + BT0264 0.29 -0.6 295,450 - BT0264 0.35 +0.7 295,508 + BT0264 0.38 -2.0 295,526 + BT0264 0.39 +0.7 295,526 + BT0264 0.39 -0.3 295,616 - BT0264 0.45 +0.7 295,680 + BT0264 0.48 -2.5
Or see this region's nucleotide sequence