Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3835

Experiment: Stool_Day7_Mouse12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3834 and BT3835 are separated by 85 nucleotidesBT3835 and BT3836 are separated by 48 nucleotides BT3834: BT3834 - 3-oxoacyl-[acyl-carrier-protein] synthase III (NCBI ptt file), at 4,989,662 to 4,990,669 BT3834 BT3835: BT3835 - putative GTP-binding protein (NCBI ptt file), at 4,990,755 to 4,991,636 BT3835 BT3836: BT3836 - putative phosphoglycerate dehydrogenase (NCBI ptt file), at 4,991,685 to 4,992,998 BT3836 Position (kb) 4990 4991 4992Strain fitness (log2 ratio) -2 -1 0 1at 4991.591 kb on + strandat 4991.640 kb on + strandat 4991.640 kb on + strandat 4991.657 kb on + strandat 4991.676 kb on + strandat 4991.676 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stool_Day7_Mouse12
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4,991,591 + -1.2
4,991,640 + -0.2
4,991,640 + -1.2
4,991,657 + +0.8
4,991,676 + -1.2
4,991,676 + -2.2

Or see this region's nucleotide sequence