Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0461

Experiment: Stool_Day7_Mouse12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0460 and BT0461 are separated by 15 nucleotidesBT0461 and BT0462 are separated by 333 nucleotides BT0460: BT0460 - beta-hexosaminidase precursor (NCBI ptt file), at 568,223 to 570,298 BT0460 BT0461: BT0461 - beta-galactosidase (NCBI ptt file), at 570,314 to 572,833 BT0461 BT0462: BT0462 - putative transcriptional regulator (NCBI ptt file), at 573,167 to 573,721 BT0462 Position (kb) 570 571 572 573Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 569.387 kb on - strand, within BT0460at 569.393 kb on - strand, within BT0460at 569.393 kb on - strand, within BT0460at 569.393 kb on - strand, within BT0460at 569.397 kb on + strand, within BT0460at 569.425 kb on + strand, within BT0460at 569.426 kb on - strand, within BT0460at 569.488 kb on + strand, within BT0460at 569.534 kb on + strand, within BT0460at 569.561 kb on + strand, within BT0460at 569.673 kb on + strand, within BT0460at 569.673 kb on + strand, within BT0460at 569.676 kb on - strand, within BT0460at 569.894 kb on - strand, within BT0460at 569.938 kb on + strand, within BT0460at 570.058 kb on + strand, within BT0460at 570.070 kb on - strand, within BT0460at 570.225 kb on - strandat 570.226 kb on + strandat 570.228 kb on + strandat 570.321 kb on + strandat 570.329 kb on - strandat 570.433 kb on + strandat 570.479 kb on + strandat 570.487 kb on - strandat 570.509 kb on + strandat 570.510 kb on - strandat 570.526 kb on - strandat 570.697 kb on + strand, within BT0461at 570.697 kb on + strand, within BT0461at 570.716 kb on + strand, within BT0461at 570.718 kb on + strand, within BT0461at 570.719 kb on - strand, within BT0461at 570.756 kb on - strand, within BT0461at 570.778 kb on - strand, within BT0461at 570.814 kb on - strand, within BT0461at 570.891 kb on + strand, within BT0461at 571.100 kb on - strand, within BT0461at 571.180 kb on + strand, within BT0461at 571.187 kb on + strand, within BT0461at 571.215 kb on - strand, within BT0461at 571.355 kb on - strand, within BT0461at 571.415 kb on - strand, within BT0461at 571.417 kb on + strand, within BT0461at 571.418 kb on - strand, within BT0461at 571.642 kb on + strand, within BT0461at 571.661 kb on + strand, within BT0461at 571.747 kb on + strand, within BT0461at 571.748 kb on - strand, within BT0461at 571.750 kb on + strand, within BT0461at 571.785 kb on - strand, within BT0461at 571.786 kb on + strand, within BT0461at 571.796 kb on - strand, within BT0461at 571.813 kb on + strand, within BT0461at 571.859 kb on - strand, within BT0461at 571.880 kb on + strand, within BT0461at 571.882 kb on + strand, within BT0461at 571.940 kb on + strand, within BT0461at 572.004 kb on + strand, within BT0461at 572.005 kb on - strand, within BT0461at 572.098 kb on - strand, within BT0461at 572.165 kb on - strand, within BT0461at 572.226 kb on + strand, within BT0461at 572.227 kb on - strand, within BT0461at 572.242 kb on - strand, within BT0461at 572.245 kb on + strand, within BT0461at 572.246 kb on - strand, within BT0461at 572.253 kb on - strand, within BT0461at 572.327 kb on - strand, within BT0461at 572.402 kb on + strand, within BT0461at 572.433 kb on - strand, within BT0461at 572.494 kb on + strand, within BT0461at 572.572 kb on + strand, within BT0461at 572.572 kb on + strand, within BT0461at 572.660 kb on - strandat 572.855 kb on + strandat 572.882 kb on - strandat 572.888 kb on - strandat 572.948 kb on + strandat 572.978 kb on - strandat 573.039 kb on + strandat 573.039 kb on + strandat 573.125 kb on + strandat 573.216 kb on - strandat 573.239 kb on - strand, within BT0462at 573.239 kb on - strand, within BT0462at 573.285 kb on - strand, within BT0462at 573.405 kb on + strand, within BT0462at 573.424 kb on + strand, within BT0462at 573.430 kb on - strand, within BT0462at 573.633 kb on - strandat 573.645 kb on - strand, within BT0462at 573.658 kb on + strand, within BT0462at 573.659 kb on - strand, within BT0462at 573.670 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stool_Day7_Mouse12
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569,387 - BT0460 0.56 -1.4
569,393 - BT0460 0.56 -1.5
569,393 - BT0460 0.56 +1.0
569,393 - BT0460 0.56 +1.0
569,397 + BT0460 0.57 -1.0
569,425 + BT0460 0.58 +0.0
569,426 - BT0460 0.58 +0.0
569,488 + BT0460 0.61 +0.0
569,534 + BT0460 0.63 +1.0
569,561 + BT0460 0.64 -2.4
569,673 + BT0460 0.70 +1.0
569,673 + BT0460 0.70 -1.0
569,676 - BT0460 0.70 +0.0
569,894 - BT0460 0.80 +1.0
569,938 + BT0460 0.83 +1.0
570,058 + BT0460 0.88 +0.8
570,070 - BT0460 0.89 -1.5
570,225 - -2.0
570,226 + -0.2
570,228 + -0.2
570,321 + -0.5
570,329 - -0.4
570,433 + +0.0
570,479 + -0.5
570,487 - -3.1
570,509 + +1.0
570,510 - -0.3
570,526 - -1.0
570,697 + BT0461 0.15 +0.5
570,697 + BT0461 0.15 +0.6
570,716 + BT0461 0.16 +1.0
570,718 + BT0461 0.16 +0.6
570,719 - BT0461 0.16 +2.0
570,756 - BT0461 0.18 +0.0
570,778 - BT0461 0.18 -0.5
570,814 - BT0461 0.20 +1.6
570,891 + BT0461 0.23 -0.8
571,100 - BT0461 0.31 -1.0
571,180 + BT0461 0.34 +1.0
571,187 + BT0461 0.35 +1.0
571,215 - BT0461 0.36 +0.0
571,355 - BT0461 0.41 -1.0
571,415 - BT0461 0.44 -0.4
571,417 + BT0461 0.44 -0.8
571,418 - BT0461 0.44 +1.0
571,642 + BT0461 0.53 +1.0
571,661 + BT0461 0.53 -1.0
571,747 + BT0461 0.57 -0.5
571,748 - BT0461 0.57 -0.5
571,750 + BT0461 0.57 -2.2
571,785 - BT0461 0.58 -1.3
571,786 + BT0461 0.58 -1.0
571,796 - BT0461 0.59 +1.0
571,813 + BT0461 0.59 -0.5
571,859 - BT0461 0.61 +1.0
571,880 + BT0461 0.62 +1.0
571,882 + BT0461 0.62 -0.5
571,940 + BT0461 0.65 -0.7
572,004 + BT0461 0.67 -1.4
572,005 - BT0461 0.67 -1.7
572,098 - BT0461 0.71 +1.0
572,165 - BT0461 0.73 -0.5
572,226 + BT0461 0.76 -2.1
572,227 - BT0461 0.76 -1.0
572,242 - BT0461 0.77 +0.4
572,245 + BT0461 0.77 -1.5
572,246 - BT0461 0.77 +0.0
572,253 - BT0461 0.77 -0.3
572,327 - BT0461 0.80 +1.6
572,402 + BT0461 0.83 -1.9
572,433 - BT0461 0.84 -0.3
572,494 + BT0461 0.87 -1.0
572,572 + BT0461 0.90 +0.0
572,572 + BT0461 0.90 -0.2
572,660 - -1.2
572,855 + -2.3
572,882 - +1.0
572,888 - -0.2
572,948 + -1.8
572,978 - +0.0
573,039 + -2.0
573,039 + -1.7
573,125 + -0.5
573,216 - +0.0
573,239 - BT0462 0.13 +0.5
573,239 - BT0462 0.13 +0.0
573,285 - BT0462 0.21 +0.5
573,405 + BT0462 0.43 -0.5
573,424 + BT0462 0.46 +1.4
573,430 - BT0462 0.47 +0.3
573,633 - +0.0
573,645 - BT0462 0.86 +1.0
573,658 + BT0462 0.88 +1.0
573,659 - BT0462 0.89 -1.5
573,670 + -3.0

Or see this region's nucleotide sequence