Experiment: Stool_Day7_Mouse9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0609 and BT0610 are separated by 21 nucleotides
BT0609: BT0609 - glycosyltransferase (NCBI ptt file), at 751,630 to 752,769
BT0609
BT0610: BT0610 - lipopolysaccharide biosynthesis protein, putative glycosyltransferase (NCBI ptt file), at 752,791 to 753,981
BT0610
Position (kb) 752
753
754 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 751.841 kb on - strand, within BT0609 at 751.847 kb on - strand, within BT0609 at 751.881 kb on + strand, within BT0609 at 751.955 kb on + strand, within BT0609 at 751.995 kb on + strand, within BT0609 at 752.065 kb on - strand, within BT0609 at 752.083 kb on - strand, within BT0609 at 752.151 kb on + strand, within BT0609 at 752.227 kb on + strand, within BT0609 at 752.373 kb on + strand, within BT0609 at 752.659 kb on - strand at 752.671 kb on - strand at 752.755 kb on - strand at 752.920 kb on + strand, within BT0610 at 752.950 kb on - strand, within BT0610 at 752.995 kb on - strand, within BT0610 at 753.070 kb on - strand, within BT0610 at 753.119 kb on + strand, within BT0610 at 753.202 kb on - strand, within BT0610 at 753.268 kb on - strand, within BT0610 at 753.310 kb on - strand, within BT0610 at 753.373 kb on + strand, within BT0610 at 753.418 kb on - strand, within BT0610 at 753.418 kb on - strand, within BT0610 at 753.545 kb on - strand, within BT0610 at 753.583 kb on - strand at 753.609 kb on + strand, within BT0610 at 753.610 kb on - strand, within BT0610 at 753.611 kb on + strand, within BT0610 at 753.611 kb on + strand, within BT0610 at 753.613 kb on + strand, within BT0610 at 753.666 kb on + strand, within BT0610 at 753.698 kb on - strand, within BT0610 at 753.744 kb on - strand, within BT0610 at 753.748 kb on - strand, within BT0610 at 753.751 kb on - strand, within BT0610 at 753.792 kb on + strand, within BT0610 at 753.849 kb on + strand, within BT0610 at 753.860 kb on + strand, within BT0610 at 754.049 kb on - strand at 754.058 kb on - strand at 754.098 kb on - strand at 754.265 kb on - strand at 754.268 kb on - strand at 754.292 kb on - strand at 754.354 kb on - strand at 754.436 kb on + strand at 754.436 kb on + strand at 754.516 kb on - strand at 754.546 kb on - strand at 754.639 kb on - strand at 754.716 kb on - strand at 754.730 kb on + strand at 754.731 kb on - strand at 754.854 kb on - strand at 754.872 kb on - strand at 754.874 kb on - strand at 754.876 kb on - strand at 754.954 kb on - strand at 754.978 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day7_Mouse9 remove 751,841 - BT0609 0.19 +0.3 751,847 - BT0609 0.19 -1.2 751,881 + BT0609 0.22 -1.7 751,955 + BT0609 0.29 -1.4 751,995 + BT0609 0.32 -0.4 752,065 - BT0609 0.38 -2.7 752,083 - BT0609 0.40 -1.2 752,151 + BT0609 0.46 -1.0 752,227 + BT0609 0.52 +0.2 752,373 + BT0609 0.65 +0.6 752,659 - -1.7 752,671 - -3.7 752,755 - -0.4 752,920 + BT0610 0.11 -1.0 752,950 - BT0610 0.13 -1.7 752,995 - BT0610 0.17 -2.1 753,070 - BT0610 0.23 -0.4 753,119 + BT0610 0.28 -1.7 753,202 - BT0610 0.35 -0.4 753,268 - BT0610 0.40 -0.1 753,310 - BT0610 0.44 -3.4 753,373 + BT0610 0.49 -1.7 753,418 - BT0610 0.53 -1.7 753,418 - BT0610 0.53 -2.2 753,545 - BT0610 0.63 -1.0 753,583 - -1.0 753,609 + BT0610 0.69 -2.0 753,610 - BT0610 0.69 -0.4 753,611 + BT0610 0.69 -1.7 753,611 + BT0610 0.69 -1.4 753,613 + BT0610 0.69 -1.4 753,666 + BT0610 0.73 -2.2 753,698 - BT0610 0.76 -1.7 753,744 - BT0610 0.80 +0.0 753,748 - BT0610 0.80 -2.0 753,751 - BT0610 0.81 -1.2 753,792 + BT0610 0.84 +2.0 753,849 + BT0610 0.89 +0.6 753,860 + BT0610 0.90 -1.4 754,049 - -3.3 754,058 - -1.0 754,098 - +0.6 754,265 - -1.0 754,268 - -0.7 754,292 - -1.4 754,354 - -0.4 754,436 + +0.6 754,436 + -3.3 754,516 - -1.7 754,546 - +0.0 754,639 - -1.0 754,716 - +0.6 754,730 + -0.4 754,731 - +0.6 754,854 - +0.6 754,872 - -0.4 754,874 - -2.0 754,876 - +2.2 754,954 - -1.0 754,978 - -2.2
Or see this region's nucleotide sequence