Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4200

Experiment: Stool_Day7_Mouse8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4199 and BT4200 are separated by 17 nucleotidesBT4200 and BT4201 are separated by 101 nucleotides BT4199: BT4199 - conserved hypothetical protein (NCBI ptt file), at 5,533,015 to 5,534,631 BT4199 BT4200: BT4200 - conserved hypothetical protein (NCBI ptt file), at 5,534,649 to 5,536,781 BT4200 BT4201: BT4201 - conserved hypothetical protein (NCBI ptt file), at 5,536,883 to 5,539,324 BT4201 Position (kb) 5534 5535 5536 5537Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5533.789 kb on + strand, within BT4199at 5533.789 kb on + strand, within BT4199at 5533.794 kb on + strand, within BT4199at 5533.825 kb on - strand, within BT4199at 5533.834 kb on - strand, within BT4199at 5533.836 kb on + strand, within BT4199at 5533.840 kb on - strandat 5533.948 kb on - strand, within BT4199at 5533.954 kb on - strand, within BT4199at 5533.984 kb on - strand, within BT4199at 5534.030 kb on - strand, within BT4199at 5534.030 kb on - strand, within BT4199at 5534.161 kb on + strand, within BT4199at 5534.181 kb on - strand, within BT4199at 5534.200 kb on - strand, within BT4199at 5534.287 kb on - strand, within BT4199at 5534.287 kb on - strand, within BT4199at 5534.357 kb on - strand, within BT4199at 5534.359 kb on + strand, within BT4199at 5534.388 kb on + strand, within BT4199at 5534.388 kb on + strand, within BT4199at 5534.421 kb on + strand, within BT4199at 5534.577 kb on + strandat 5534.644 kb on + strandat 5534.644 kb on + strandat 5534.646 kb on + strandat 5534.648 kb on + strandat 5534.649 kb on - strandat 5534.649 kb on - strandat 5534.669 kb on + strandat 5534.669 kb on + strandat 5534.846 kb on - strandat 5534.870 kb on + strand, within BT4200at 5534.909 kb on - strand, within BT4200at 5534.929 kb on + strand, within BT4200at 5534.934 kb on - strand, within BT4200at 5534.934 kb on - strand, within BT4200at 5534.982 kb on - strand, within BT4200at 5535.071 kb on - strand, within BT4200at 5535.071 kb on - strand, within BT4200at 5535.074 kb on + strand, within BT4200at 5535.075 kb on - strand, within BT4200at 5535.179 kb on - strand, within BT4200at 5535.179 kb on - strandat 5535.240 kb on - strand, within BT4200at 5535.240 kb on - strand, within BT4200at 5535.245 kb on + strand, within BT4200at 5535.246 kb on - strand, within BT4200at 5535.499 kb on + strand, within BT4200at 5535.500 kb on - strand, within BT4200at 5535.501 kb on + strand, within BT4200at 5535.502 kb on - strand, within BT4200at 5535.665 kb on + strandat 5535.672 kb on + strand, within BT4200at 5535.676 kb on + strand, within BT4200at 5535.736 kb on + strand, within BT4200at 5535.737 kb on - strand, within BT4200at 5535.758 kb on - strand, within BT4200at 5535.761 kb on - strand, within BT4200at 5535.788 kb on - strand, within BT4200at 5535.839 kb on + strand, within BT4200at 5535.840 kb on - strand, within BT4200at 5535.849 kb on - strand, within BT4200at 5535.849 kb on - strand, within BT4200at 5535.881 kb on + strand, within BT4200at 5535.889 kb on - strand, within BT4200at 5535.939 kb on - strand, within BT4200at 5535.940 kb on + strand, within BT4200at 5535.940 kb on + strand, within BT4200at 5535.966 kb on - strand, within BT4200at 5535.996 kb on + strand, within BT4200at 5535.996 kb on + strand, within BT4200at 5536.041 kb on - strand, within BT4200at 5536.061 kb on + strand, within BT4200at 5536.135 kb on - strand, within BT4200at 5536.217 kb on + strand, within BT4200at 5536.264 kb on - strand, within BT4200at 5536.321 kb on - strand, within BT4200at 5536.356 kb on - strand, within BT4200at 5536.394 kb on + strand, within BT4200at 5536.418 kb on - strand, within BT4200at 5536.418 kb on - strand, within BT4200at 5536.420 kb on + strand, within BT4200at 5536.437 kb on - strand, within BT4200at 5536.500 kb on - strand, within BT4200at 5536.568 kb on - strandat 5536.586 kb on - strandat 5536.593 kb on - strandat 5536.608 kb on - strandat 5536.625 kb on + strandat 5536.626 kb on - strandat 5536.628 kb on + strandat 5536.632 kb on + strandat 5536.633 kb on - strandat 5536.784 kb on + strandat 5536.794 kb on + strandat 5536.797 kb on - strandat 5536.797 kb on - strandat 5536.797 kb on - strandat 5536.801 kb on - strandat 5536.828 kb on + strandat 5536.855 kb on + strandat 5536.869 kb on - strandat 5536.904 kb on - strandat 5536.938 kb on - strandat 5536.960 kb on - strandat 5537.038 kb on - strandat 5537.098 kb on - strandat 5537.207 kb on - strand, within BT4201at 5537.209 kb on - strand, within BT4201at 5537.232 kb on - strand, within BT4201at 5537.250 kb on + strand, within BT4201at 5537.251 kb on - strand, within BT4201at 5537.414 kb on - strand, within BT4201at 5537.453 kb on - strand, within BT4201at 5537.453 kb on - strand, within BT4201at 5537.459 kb on - strand, within BT4201at 5537.486 kb on - strand, within BT4201at 5537.487 kb on + strand, within BT4201at 5537.488 kb on - strand, within BT4201at 5537.488 kb on - strand, within BT4201at 5537.546 kb on - strand, within BT4201at 5537.665 kb on + strand, within BT4201at 5537.709 kb on - strand, within BT4201at 5537.715 kb on - strand, within BT4201at 5537.715 kb on - strand, within BT4201at 5537.715 kb on - strand, within BT4201at 5537.715 kb on - strand, within BT4201at 5537.715 kb on - strand, within BT4201

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Per-strain Table

Position Strand Gene LocusTag Fraction Stool_Day7_Mouse8
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5,533,789 + BT4199 0.48 -1.4
5,533,789 + BT4199 0.48 -0.3
5,533,794 + BT4199 0.48 -0.1
5,533,825 - BT4199 0.50 +0.9
5,533,834 - BT4199 0.51 +0.9
5,533,836 + BT4199 0.51 -3.1
5,533,840 - -0.1
5,533,948 - BT4199 0.58 -0.9
5,533,954 - BT4199 0.58 +0.1
5,533,984 - BT4199 0.60 -1.4
5,534,030 - BT4199 0.63 -1.2
5,534,030 - BT4199 0.63 -0.1
5,534,161 + BT4199 0.71 -1.1
5,534,181 - BT4199 0.72 -2.1
5,534,200 - BT4199 0.73 +1.5
5,534,287 - BT4199 0.79 +0.2
5,534,287 - BT4199 0.79 -0.6
5,534,357 - BT4199 0.83 -0.1
5,534,359 + BT4199 0.83 -2.1
5,534,388 + BT4199 0.85 -0.1
5,534,388 + BT4199 0.85 -1.9
5,534,421 + BT4199 0.87 +1.5
5,534,577 + -0.9
5,534,644 + -0.6
5,534,644 + -1.3
5,534,646 + -0.1
5,534,648 + +0.9
5,534,649 - -1.4
5,534,649 - +0.9
5,534,669 + +0.9
5,534,669 + -0.7
5,534,846 - -0.1
5,534,870 + BT4200 0.10 -1.1
5,534,909 - BT4200 0.12 -0.7
5,534,929 + BT4200 0.13 -3.4
5,534,934 - BT4200 0.13 -2.6
5,534,934 - BT4200 0.13 +0.9
5,534,982 - BT4200 0.16 -1.7
5,535,071 - BT4200 0.20 -1.6
5,535,071 - BT4200 0.20 -1.1
5,535,074 + BT4200 0.20 -0.1
5,535,075 - BT4200 0.20 -2.3
5,535,179 - BT4200 0.25 -0.1
5,535,179 - -1.1
5,535,240 - BT4200 0.28 -4.1
5,535,240 - BT4200 0.28 +0.9
5,535,245 + BT4200 0.28 -0.9
5,535,246 - BT4200 0.28 -2.6
5,535,499 + BT4200 0.40 -1.4
5,535,500 - BT4200 0.40 -2.5
5,535,501 + BT4200 0.40 -0.6
5,535,502 - BT4200 0.40 -1.9
5,535,665 + -0.1
5,535,672 + BT4200 0.48 -0.1
5,535,676 + BT4200 0.48 -0.9
5,535,736 + BT4200 0.51 -2.3
5,535,737 - BT4200 0.51 -2.3
5,535,758 - BT4200 0.52 -0.1
5,535,761 - BT4200 0.52 -1.1
5,535,788 - BT4200 0.53 +0.5
5,535,839 + BT4200 0.56 +1.9
5,535,840 - BT4200 0.56 -1.4
5,535,849 - BT4200 0.56 -4.2
5,535,849 - BT4200 0.56 -2.3
5,535,881 + BT4200 0.58 -1.5
5,535,889 - BT4200 0.58 +0.9
5,535,939 - BT4200 0.60 -0.1
5,535,940 + BT4200 0.61 -0.1
5,535,940 + BT4200 0.61 -0.6
5,535,966 - BT4200 0.62 -1.4
5,535,996 + BT4200 0.63 +1.9
5,535,996 + BT4200 0.63 -1.1
5,536,041 - BT4200 0.65 -0.1
5,536,061 + BT4200 0.66 +0.9
5,536,135 - BT4200 0.70 -0.1
5,536,217 + BT4200 0.74 +1.4
5,536,264 - BT4200 0.76 +0.9
5,536,321 - BT4200 0.78 +0.9
5,536,356 - BT4200 0.80 -1.4
5,536,394 + BT4200 0.82 -0.6
5,536,418 - BT4200 0.83 +0.9
5,536,418 - BT4200 0.83 -0.1
5,536,420 + BT4200 0.83 +0.2
5,536,437 - BT4200 0.84 -0.6
5,536,500 - BT4200 0.87 -1.8
5,536,568 - -2.2
5,536,586 - -1.6
5,536,593 - -1.1
5,536,608 - +0.4
5,536,625 + -0.5
5,536,626 - -2.4
5,536,628 + -1.2
5,536,632 + -0.1
5,536,633 - -0.1
5,536,784 + -2.4
5,536,794 + -0.1
5,536,797 - -0.1
5,536,797 - -0.6
5,536,797 - +0.2
5,536,801 - -0.9
5,536,828 + +0.9
5,536,855 + -0.6
5,536,869 - +0.5
5,536,904 - -1.6
5,536,938 - -0.1
5,536,960 - -0.4
5,537,038 - -1.0
5,537,098 - +0.9
5,537,207 - BT4201 0.13 +0.5
5,537,209 - BT4201 0.13 +1.5
5,537,232 - BT4201 0.14 +0.5
5,537,250 + BT4201 0.15 +0.9
5,537,251 - BT4201 0.15 +0.5
5,537,414 - BT4201 0.22 -1.1
5,537,453 - BT4201 0.23 -1.1
5,537,453 - BT4201 0.23 -2.1
5,537,459 - BT4201 0.24 -0.7
5,537,486 - BT4201 0.25 -2.8
5,537,487 + BT4201 0.25 -2.9
5,537,488 - BT4201 0.25 +0.9
5,537,488 - BT4201 0.25 -1.2
5,537,546 - BT4201 0.27 -1.6
5,537,665 + BT4201 0.32 -1.1
5,537,709 - BT4201 0.34 -1.4
5,537,715 - BT4201 0.34 +0.9
5,537,715 - BT4201 0.34 -0.6
5,537,715 - BT4201 0.34 -1.4
5,537,715 - BT4201 0.34 -1.1
5,537,715 - BT4201 0.34 +0.9

Or see this region's nucleotide sequence