Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3439

Experiment: Stool_Day7_Mouse8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stool_Day7_Mouse8
4,429,054	-		BT3437	0.80	+1.0
4,429,101	-		BT3437	0.83	+0.3
4,429,112	+		BT3437	0.84	+0.3
4,429,113	-		BT3437	0.84	-1.0
4,429,113	-		BT3437	0.84	-1.1
4,429,115	-		BT3437	0.84	+0.4
4,429,117	-		BT3437	0.84	-1.0
4,429,135	+		BT3437	0.85	-0.3
4,429,138	-		BT3437	0.85	+1.0
4,429,143	+		BT3437	0.86	-1.1
4,429,217	+				-2.5
4,429,253	+				+1.0
4,429,255	+				-0.9
4,429,282	+				-1.6
4,429,338	-				-2.0
4,429,353	-				-0.0
4,429,388	+				-1.6
4,429,398	-				-1.0
4,429,418	+				-2.6
4,429,463	+				-1.8
4,429,473	+				-0.8
4,429,474	-				-1.7
4,429,493	+				-1.7
4,429,509	+				-2.5
4,429,550	-				-4.6
4,429,628	-		BT3438	0.22	-3.2
4,429,665	-		BT3438	0.31	-1.3
4,429,668	+		BT3438	0.32	-1.0
4,429,863	+		BT3438	0.78	-1.0
4,429,900	-		BT3438	0.87	-0.0
4,429,906	-		BT3438	0.88	-0.6
4,429,912	+		BT3438	0.89	+1.0
4,429,930	+				-2.3
4,429,934	-				-0.0
4,429,960	-				-3.4
4,429,964	-				-0.0
4,429,986	+				-1.6
4,430,024	+				-0.6
4,430,046	+				-0.0
4,430,056	-				-0.0
4,430,064	+				-4.2
4,430,067	-				+0.2
4,430,157	+				-0.0
4,430,170	-				+0.4
4,430,172	+				-0.5
4,430,184	+				-2.3
4,430,188	+				-0.6
4,430,189	-				+0.5
4,430,189	-				+1.0
4,430,189	-				-1.2
4,430,202	+				-0.0
4,430,202	+				-1.3
4,430,202	+				-0.0
4,430,202	+				+1.6
4,430,203	-				-0.6
4,430,204	+				-0.0
4,430,204	+				-0.6
4,430,216	-				+1.0
4,430,245	+		BT3439	0.11	-0.0
4,430,267	+		BT3439	0.13	-4.2
4,430,343	+		BT3439	0.17	-3.8
4,430,364	-		BT3439	0.18	-1.0
4,430,412	-		BT3439	0.21	-3.2
4,430,431	+		BT3439	0.22	-3.1
4,430,456	-		BT3439	0.24	+1.0
4,430,456	-		BT3439	0.24	+1.0
4,430,462	-		BT3439	0.24	+1.0
4,430,462	-		BT3439	0.24	-3.3
4,430,462	-		BT3439	0.24	-0.6
4,430,462	-		BT3439	0.24	-1.3
4,430,494	+		BT3439	0.26	-2.5
4,430,494	+		BT3439	0.26	-0.0
4,430,495	-		BT3439	0.26	-4.1
4,430,495	-		BT3439	0.26	+1.0
4,430,495	-		BT3439	0.26	-1.0
4,430,499	+		BT3439	0.27	-1.6
4,430,501	+		BT3439	0.27	-3.2
4,430,540	+		BT3439	0.29	-1.3
4,430,541	-		BT3439	0.29	-6.2
4,430,551	+		BT3439	0.30	-3.1
4,430,551	+		BT3439	0.30	-1.6
4,430,552	-		BT3439	0.30	+1.0
4,430,552	-		BT3439	0.30	-1.6
4,430,554	-		BT3439	0.30	-2.1
4,430,554	-		BT3439	0.30	-2.6
4,430,602	+		BT3439	0.33	-3.2
4,430,650	-		BT3439	0.36	-1.8
4,430,651	+		BT3439	0.36	-3.1
4,430,651	+		BT3439	0.36	-1.0
4,430,652	-		BT3439	0.36	+1.0
4,430,677	+		BT3439	0.37	-1.1
4,430,677	+		BT3439	0.37	-0.6
4,430,678	-		BT3439	0.37	-0.9
4,430,680	+		BT3439	0.37	+1.0
4,430,720	+		BT3439	0.40	-3.2
4,430,721	-		BT3439	0.40	-2.2
4,430,729	-		BT3439	0.40	+2.6
4,430,734	-		BT3439	0.41	-0.0
4,430,743	+		BT3439	0.41	+1.0
4,430,775	+		BT3439	0.43	-0.0
4,430,803	-		BT3439	0.45	-1.8
4,430,929	-		BT3439	0.52	-1.8
4,430,929	-		BT3439	0.52	+1.0
4,430,939	+		BT3439	0.53	-1.6
4,430,940	-		BT3439	0.53	-3.3
4,430,978	+		BT3439	0.55	-3.0
4,430,983	+		BT3439	0.55	-2.8
4,430,984	-		BT3439	0.55	-1.0
4,431,029	-		BT3439	0.58	-3.9
4,431,030	+		BT3439	0.58	-3.5
4,431,030	+		BT3439	0.58	-2.9
4,431,031	-		BT3439	0.58	-1.7
4,431,033	+		BT3439	0.58	-5.4
4,431,057	+		BT3439	0.60	+1.0
4,431,068	+		BT3439	0.60	-1.0
4,431,069	-		BT3439	0.61	-1.0
4,431,080	-		BT3439	0.61	-3.2
4,431,092	+		BT3439	0.62	-3.0
4,431,092	+		BT3439	0.62	-0.0
4,431,148	+		BT3439	0.65	-0.6
4,431,182	+		BT3439	0.67	+1.0
4,431,183	-		BT3439	0.67	-1.0
4,431,209	+		BT3439	0.69	-1.0
4,431,209	+		BT3439	0.69	-3.3
4,431,210	-		BT3439	0.69	-0.6
4,431,230	-		BT3439	0.70	-0.0
4,431,290	+		BT3439	0.74	+2.0
4,431,414	+		BT3439	0.81	-0.6
4,431,450	+		BT3439	0.83	-3.5
4,431,451	-		BT3439	0.83	-1.8
4,431,501	+		BT3439	0.86	-3.0
4,431,501	+		BT3439	0.86	-4.4
4,431,501	+		BT3439	0.86	-0.0
4,431,501	+		BT3439	0.86	-1.8
4,431,502	-		BT3439	0.86	-0.0
4,431,502	-		BT3439	0.86	-4.4
4,431,524	-		BT3439	0.88	+1.0
4,431,593	-				-1.3
4,431,599	-				-4.3
4,431,653	-				-2.0
4,431,662	-				-2.3
4,431,687	-				-0.6
4,431,687	-				+1.0
4,431,701	+				-3.2
4,431,703	+				-0.0
4,431,704	-				-6.0
4,431,708	-				-1.0
4,431,720	-				+1.0
4,431,811	+				-0.0
4,431,859	-				+1.0
4,431,861	-				+0.3
4,431,890	-		BT3440	0.11	+1.6
4,431,899	-		BT3440	0.12	+0.4
4,431,934	+		BT3440	0.14	-6.4
4,431,935	-		BT3440	0.14	-0.0
4,431,942	+		BT3440	0.15	-1.6
4,431,961	-		BT3440	0.16	-1.9
4,431,976	-		BT3440	0.17	+0.1
4,432,011	-		BT3440	0.20	+1.0
4,432,026	+		BT3440	0.21	-1.6
4,432,026	+		BT3440	0.21	-1.8
4,432,027	-		BT3440	0.21	+1.0
4,432,027	-		BT3440	0.21	-1.0
4,432,027	-		BT3440	0.21	-0.7
4,432,027	-		BT3440	0.21	+0.6
4,432,028	+		BT3440	0.21	-1.6
4,432,029	-		BT3440	0.21	-1.3
4,432,029	-		BT3440	0.21	-1.2
4,432,097	+		BT3440	0.27	+1.0
4,432,097	+		BT3440	0.27	-0.0
4,432,098	-		BT3440	0.27	-2.7
4,432,107	-		BT3440	0.27	-1.0
4,432,115	+		BT3440	0.28	+1.6
4,432,115	+		BT3440	0.28	-3.1
4,432,116	-		BT3440	0.28	-1.6
4,432,172	-		BT3440	0.32	-2.3
4,432,319	-		BT3440	0.43	-3.8
4,432,389	+		BT3440	0.48	-3.1
4,432,396	+		BT3440	0.49	-3.0
4,432,397	-		BT3440	0.49	-1.8
4,432,418	+		BT3440	0.51	-0.6
4,432,431	+		BT3440	0.52	-1.3
4,432,432	-		BT3440	0.52	-1.8
4,432,435	+		BT3440	0.52	-0.0
4,432,489	+		BT3440	0.56	-0.5
4,432,490	-		BT3440	0.56	+1.0
4,432,494	+		BT3440	0.56	-1.3
4,432,522	+		BT3440	0.58	-0.6
4,432,522	+		BT3440	0.58	-1.8
4,432,602	+		BT3440	0.64	-3.2
4,432,641	+		BT3440	0.67	-3.7
4,432,642	-		BT3440	0.67	-1.9
4,432,651	-		BT3440	0.68	-1.0
4,432,662	-		BT3440	0.69	-2.9
4,432,721	+		BT3440	0.73	-0.0