Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0164

Experiment: Stool_Day7_Mouse8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0162 and BT0163 are separated by 45 nucleotidesBT0163 and BT0164 are separated by 7 nucleotidesBT0164 and BT0165 are separated by 96 nucleotidesBT0165 and BT0166 are separated by 15 nucleotides BT0162: BT0162 - penicillin-binding protein 1C (PBP-1c) (NCBI ptt file), at 167,345 to 169,663 BT0162 BT0163: BT0163 - conserved hypothetical protein (NCBI ptt file), at 169,709 to 169,975 BT0163 BT0164: BT0164 - conserved hypothetical protein (NCBI ptt file), at 169,983 to 175,358 BT0164 BT0165: BT0165 - peptidyl-prolyl cis-trans isomerase (NCBI ptt file), at 175,455 to 175,856 BT0165 BT0166: BT0166 - putative thiol-disulfide isomerase (NCBI ptt file), at 175,872 to 176,429 BT0166 Position (kb) 169 170 171 172 173 174 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 169.018 kb on - strand, within BT0162at 169.182 kb on + strand, within BT0162at 169.183 kb on - strand, within BT0162at 169.183 kb on - strand, within BT0162at 169.310 kb on - strand, within BT0162at 169.323 kb on - strand, within BT0162at 169.418 kb on - strandat 169.418 kb on - strand, within BT0162at 169.573 kb on + strandat 169.607 kb on + strandat 169.669 kb on + strandat 169.670 kb on - strandat 169.675 kb on - strandat 169.693 kb on - strandat 169.768 kb on + strand, within BT0163at 169.796 kb on - strand, within BT0163at 169.867 kb on - strand, within BT0163at 169.898 kb on - strand, within BT0163at 169.903 kb on + strand, within BT0163at 169.905 kb on + strand, within BT0163at 169.986 kb on + strandat 169.986 kb on + strandat 169.988 kb on + strandat 170.006 kb on + strandat 170.053 kb on + strandat 170.130 kb on - strandat 170.130 kb on - strandat 170.180 kb on + strandat 170.180 kb on + strandat 170.563 kb on + strand, within BT0164at 170.734 kb on + strand, within BT0164at 170.770 kb on - strand, within BT0164at 170.770 kb on - strand, within BT0164at 170.798 kb on + strand, within BT0164at 170.798 kb on + strand, within BT0164at 170.906 kb on - strand, within BT0164at 170.980 kb on + strand, within BT0164at 170.982 kb on + strand, within BT0164at 171.214 kb on + strand, within BT0164at 171.214 kb on + strand, within BT0164at 171.642 kb on + strand, within BT0164at 171.686 kb on + strand, within BT0164at 171.687 kb on - strand, within BT0164at 171.687 kb on - strand, within BT0164at 171.814 kb on + strand, within BT0164at 171.814 kb on + strand, within BT0164at 171.848 kb on - strand, within BT0164at 171.848 kb on - strand, within BT0164at 171.959 kb on + strand, within BT0164at 171.960 kb on - strand, within BT0164at 172.002 kb on - strand, within BT0164at 172.097 kb on + strand, within BT0164at 172.097 kb on + strand, within BT0164at 172.141 kb on - strand, within BT0164at 172.149 kb on - strand, within BT0164at 172.327 kb on + strand, within BT0164at 172.327 kb on + strand, within BT0164at 172.462 kb on + strand, within BT0164at 172.631 kb on - strand, within BT0164at 172.639 kb on + strand, within BT0164at 172.639 kb on + strand, within BT0164at 172.950 kb on - strand, within BT0164at 172.979 kb on - strand, within BT0164at 173.079 kb on - strand, within BT0164at 173.091 kb on + strand, within BT0164at 173.091 kb on + strand, within BT0164at 173.092 kb on - strand, within BT0164at 173.200 kb on - strand, within BT0164at 173.262 kb on - strand, within BT0164at 173.264 kb on - strand, within BT0164at 173.303 kb on - strand, within BT0164at 173.304 kb on + strand, within BT0164at 173.517 kb on + strand, within BT0164at 173.518 kb on - strand, within BT0164at 173.521 kb on + strand, within BT0164at 173.522 kb on - strand, within BT0164at 173.522 kb on - strand, within BT0164at 173.688 kb on + strand, within BT0164at 173.717 kb on + strand, within BT0164at 173.785 kb on + strand, within BT0164at 173.789 kb on - strand, within BT0164at 173.827 kb on + strand, within BT0164at 173.859 kb on - strand, within BT0164at 173.861 kb on - strand, within BT0164at 173.861 kb on - strand, within BT0164at 173.863 kb on + strand, within BT0164at 173.863 kb on + strand, within BT0164at 173.866 kb on + strand, within BT0164at 173.999 kb on - strand, within BT0164at 174.038 kb on - strand, within BT0164at 174.213 kb on + strand, within BT0164at 174.258 kb on + strand, within BT0164at 174.259 kb on - strand, within BT0164at 174.331 kb on - strand, within BT0164at 174.406 kb on - strand, within BT0164at 174.466 kb on - strand, within BT0164at 174.561 kb on + strand, within BT0164at 174.703 kb on + strand, within BT0164at 174.746 kb on - strand, within BT0164at 174.826 kb on - strandat 174.859 kb on - strandat 174.923 kb on + strandat 175.068 kb on - strandat 175.085 kb on - strandat 175.085 kb on - strandat 175.176 kb on + strandat 175.318 kb on - strandat 175.473 kb on + strandat 175.474 kb on - strandat 175.528 kb on - strand, within BT0165at 175.549 kb on - strand, within BT0165at 175.699 kb on + strand, within BT0165at 175.700 kb on - strand, within BT0165at 175.702 kb on + strand, within BT0165at 175.703 kb on - strand, within BT0165at 175.703 kb on - strand, within BT0165at 175.703 kb on - strand, within BT0165at 175.758 kb on + strand, within BT0165at 175.758 kb on + strand, within BT0165at 175.758 kb on + strand, within BT0165at 175.762 kb on + strand, within BT0165at 175.768 kb on - strand, within BT0165at 175.826 kb on - strandat 175.854 kb on + strandat 175.854 kb on + strandat 175.855 kb on - strandat 175.858 kb on + strandat 175.885 kb on + strandat 175.885 kb on + strandat 175.904 kb on - strandat 175.909 kb on + strandat 175.909 kb on + strandat 175.909 kb on + strandat 175.909 kb on + strandat 175.913 kb on + strandat 175.913 kb on + strandat 175.914 kb on - strandat 175.941 kb on - strand, within BT0166at 176.142 kb on + strand, within BT0166at 176.144 kb on + strand, within BT0166at 176.144 kb on + strand, within BT0166at 176.144 kb on + strand, within BT0166at 176.161 kb on + strand, within BT0166at 176.162 kb on - strand, within BT0166at 176.174 kb on + strand, within BT0166at 176.300 kb on + strand, within BT0166at 176.328 kb on - strand, within BT0166at 176.339 kb on - strand, within BT0166at 176.339 kb on - strand, within BT0166at 176.342 kb on + strand, within BT0166at 176.342 kb on + strand, within BT0166at 176.343 kb on - strand, within BT0166at 176.343 kb on - strand, within BT0166at 176.343 kb on - strand, within BT0166

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Per-strain Table

Position Strand Gene LocusTag Fraction Stool_Day7_Mouse8
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169,018 - BT0162 0.72 +0.0
169,182 + BT0162 0.79 -2.0
169,183 - BT0162 0.79 -0.6
169,183 - BT0162 0.79 +1.0
169,310 - BT0162 0.85 -1.3
169,323 - BT0162 0.85 +0.0
169,418 - -0.6
169,418 - BT0162 0.89 +0.0
169,573 + -0.6
169,607 + -0.6
169,669 + -0.6
169,670 - -1.0
169,675 - +0.0
169,693 - -1.6
169,768 + BT0163 0.22 +1.0
169,796 - BT0163 0.33 -1.2
169,867 - BT0163 0.59 +1.0
169,898 - BT0163 0.71 -3.4
169,903 + BT0163 0.73 +1.0
169,905 + BT0163 0.73 -0.2
169,986 + -1.6
169,986 + +0.4
169,988 + +0.2
170,006 + -1.8
170,053 + -0.6
170,130 - -1.0
170,130 - +1.0
170,180 + -0.6
170,180 + +2.0
170,563 + BT0164 0.11 +0.0
170,734 + BT0164 0.14 -1.3
170,770 - BT0164 0.15 +0.0
170,770 - BT0164 0.15 -0.3
170,798 + BT0164 0.15 +0.0
170,798 + BT0164 0.15 -1.1
170,906 - BT0164 0.17 -0.6
170,980 + BT0164 0.19 -1.4
170,982 + BT0164 0.19 -0.5
171,214 + BT0164 0.23 -1.2
171,214 + BT0164 0.23 -0.3
171,642 + BT0164 0.31 -2.0
171,686 + BT0164 0.32 -0.8
171,687 - BT0164 0.32 -1.3
171,687 - BT0164 0.32 +0.6
171,814 + BT0164 0.34 -2.0
171,814 + BT0164 0.34 -2.3
171,848 - BT0164 0.35 -2.2
171,848 - BT0164 0.35 -0.4
171,959 + BT0164 0.37 -0.8
171,960 - BT0164 0.37 +0.0
172,002 - BT0164 0.38 +1.4
172,097 + BT0164 0.39 -2.7
172,097 + BT0164 0.39 -0.2
172,141 - BT0164 0.40 -1.6
172,149 - BT0164 0.40 -0.3
172,327 + BT0164 0.44 -1.4
172,327 + BT0164 0.44 -0.7
172,462 + BT0164 0.46 +0.6
172,631 - BT0164 0.49 +1.0
172,639 + BT0164 0.49 +1.6
172,639 + BT0164 0.49 +1.7
172,950 - BT0164 0.55 -0.6
172,979 - BT0164 0.56 +1.0
173,079 - BT0164 0.58 -1.0
173,091 + BT0164 0.58 +1.0
173,091 + BT0164 0.58 +1.0
173,092 - BT0164 0.58 -2.7
173,200 - BT0164 0.60 -1.2
173,262 - BT0164 0.61 +3.0
173,264 - BT0164 0.61 +1.0
173,303 - BT0164 0.62 -0.4
173,304 + BT0164 0.62 -0.8
173,517 + BT0164 0.66 +1.0
173,518 - BT0164 0.66 -1.3
173,521 + BT0164 0.66 +0.6
173,522 - BT0164 0.66 -0.2
173,522 - BT0164 0.66 +0.5
173,688 + BT0164 0.69 -0.6
173,717 + BT0164 0.69 +1.0
173,785 + BT0164 0.71 +1.0
173,789 - BT0164 0.71 -1.3
173,827 + BT0164 0.72 -1.6
173,859 - BT0164 0.72 +0.4
173,861 - BT0164 0.72 +0.6
173,861 - BT0164 0.72 -0.1
173,863 + BT0164 0.72 +0.4
173,863 + BT0164 0.72 -0.6
173,866 + BT0164 0.72 +5.6
173,999 - BT0164 0.75 -1.0
174,038 - BT0164 0.75 +0.8
174,213 + BT0164 0.79 +1.0
174,258 + BT0164 0.80 -2.0
174,259 - BT0164 0.80 +0.0
174,331 - BT0164 0.81 +0.6
174,406 - BT0164 0.82 +1.3
174,466 - BT0164 0.83 -3.0
174,561 + BT0164 0.85 +0.4
174,703 + BT0164 0.88 +1.4
174,746 - BT0164 0.89 +2.0
174,826 - +0.0
174,859 - +1.0
174,923 + -0.7
175,068 - +0.0
175,085 - +0.4
175,085 - -1.3
175,176 + +1.0
175,318 - +2.0
175,473 + -2.0
175,474 - +1.0
175,528 - BT0165 0.18 +1.0
175,549 - BT0165 0.23 +1.0
175,699 + BT0165 0.61 -1.0
175,700 - BT0165 0.61 -0.8
175,702 + BT0165 0.61 +0.0
175,703 - BT0165 0.62 -1.3
175,703 - BT0165 0.62 -0.6
175,703 - BT0165 0.62 +0.0
175,758 + BT0165 0.75 -1.6
175,758 + BT0165 0.75 -0.5
175,758 + BT0165 0.75 +1.0
175,762 + BT0165 0.76 +1.3
175,768 - BT0165 0.78 -0.8
175,826 - +0.0
175,854 + -0.3
175,854 + -0.6
175,855 - -0.6
175,858 + +0.0
175,885 + +0.0
175,885 + -0.3
175,904 - -1.0
175,909 + -1.3
175,909 + -1.3
175,909 + -1.4
175,909 + +1.0
175,913 + +1.0
175,913 + +2.6
175,914 - -1.6
175,941 - BT0166 0.12 +0.6
176,142 + BT0166 0.48 -3.3
176,144 + BT0166 0.49 +1.6
176,144 + BT0166 0.49 -1.3
176,144 + BT0166 0.49 -1.3
176,161 + BT0166 0.52 -0.0
176,162 - BT0166 0.52 -1.8
176,174 + BT0166 0.54 +2.0
176,300 + BT0166 0.77 -0.0
176,328 - BT0166 0.82 -0.8
176,339 - BT0166 0.84 -1.1
176,339 - BT0166 0.84 -0.6
176,342 + BT0166 0.84 +1.0
176,342 + BT0166 0.84 -0.0
176,343 - BT0166 0.84 -2.0
176,343 - BT0166 0.84 +1.0
176,343 - BT0166 0.84 -0.6

Or see this region's nucleotide sequence