Experiment: Stool_Day7_Mouse8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0054 and BT0055 are separated by 7 nucleotides BT0055 and BT0056 are separated by 20 nucleotides
BT0054: BT0054 - putative glycosyltransferase (NCBI ptt file), at 50,011 to 51,132
BT0054
BT0055: BT0055 - putative glycosyltransferase (NCBI ptt file), at 51,140 to 52,255
BT0055
BT0056: BT0056 - putative glycosyltransferase (NCBI ptt file), at 52,276 to 53,298
BT0056
Position (kb) 51
52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 50.147 kb on + strand, within BT0054 at 50.188 kb on - strand, within BT0054 at 50.188 kb on - strand, within BT0054 at 50.240 kb on - strand, within BT0054 at 50.242 kb on - strand, within BT0054 at 50.242 kb on - strand, within BT0054 at 50.243 kb on + strand, within BT0054 at 50.243 kb on + strand, within BT0054 at 50.286 kb on - strand, within BT0054 at 50.412 kb on - strand, within BT0054 at 50.467 kb on - strand, within BT0054 at 50.467 kb on - strand, within BT0054 at 50.471 kb on + strand, within BT0054 at 50.472 kb on - strand, within BT0054 at 50.472 kb on - strand, within BT0054 at 50.475 kb on - strand, within BT0054 at 50.475 kb on - strand, within BT0054 at 50.540 kb on + strand, within BT0054 at 50.541 kb on - strand, within BT0054 at 50.557 kb on - strand, within BT0054 at 50.609 kb on + strand, within BT0054 at 50.648 kb on + strand, within BT0054 at 50.794 kb on + strand, within BT0054 at 50.797 kb on - strand, within BT0054 at 50.797 kb on - strand, within BT0054 at 50.802 kb on + strand, within BT0054 at 50.816 kb on - strand, within BT0054 at 50.825 kb on - strand, within BT0054 at 50.846 kb on + strand, within BT0054 at 50.943 kb on + strand, within BT0054 at 50.944 kb on - strand, within BT0054 at 50.971 kb on + strand, within BT0054 at 51.036 kb on + strand at 51.037 kb on - strand at 51.080 kb on - strand at 51.080 kb on - strand at 51.080 kb on - strand at 51.168 kb on - strand at 51.211 kb on - strand at 51.217 kb on + strand at 51.355 kb on - strand, within BT0055 at 51.490 kb on - strand, within BT0055 at 51.532 kb on + strand, within BT0055 at 51.580 kb on - strand, within BT0055 at 51.582 kb on - strand, within BT0055 at 51.586 kb on - strand, within BT0055 at 51.714 kb on + strand, within BT0055 at 51.715 kb on - strand, within BT0055 at 51.715 kb on - strand, within BT0055 at 51.792 kb on - strand, within BT0055 at 51.792 kb on - strand at 51.825 kb on - strand, within BT0055 at 52.027 kb on - strand, within BT0055 at 52.027 kb on - strand, within BT0055 at 52.205 kb on - strand at 52.205 kb on - strand at 52.282 kb on - strand at 52.284 kb on - strand at 52.400 kb on + strand, within BT0056 at 52.416 kb on + strand, within BT0056 at 52.444 kb on + strand, within BT0056 at 52.444 kb on + strand, within BT0056 at 52.527 kb on - strand, within BT0056 at 52.527 kb on - strand, within BT0056 at 52.587 kb on - strand, within BT0056 at 52.721 kb on + strand, within BT0056 at 52.721 kb on + strand, within BT0056 at 52.721 kb on + strand, within BT0056 at 52.764 kb on - strand, within BT0056 at 52.794 kb on - strand, within BT0056 at 52.931 kb on - strand, within BT0056 at 52.931 kb on - strand, within BT0056 at 53.086 kb on + strand, within BT0056 at 53.114 kb on + strand, within BT0056 at 53.121 kb on + strand, within BT0056 at 53.123 kb on + strand, within BT0056 at 53.124 kb on - strand, within BT0056 at 53.126 kb on - strand, within BT0056 at 53.150 kb on - strand, within BT0056 at 53.221 kb on - strand at 53.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day7_Mouse8 remove 50,147 + BT0054 0.12 +0.0 50,188 - BT0054 0.16 -0.1 50,188 - BT0054 0.16 -1.7 50,240 - BT0054 0.20 +1.0 50,242 - BT0054 0.21 -3.4 50,242 - BT0054 0.21 -0.6 50,243 + BT0054 0.21 -2.6 50,243 + BT0054 0.21 -0.3 50,286 - BT0054 0.25 -0.6 50,412 - BT0054 0.36 -1.3 50,467 - BT0054 0.41 +0.0 50,467 - BT0054 0.41 +1.1 50,471 + BT0054 0.41 +0.4 50,472 - BT0054 0.41 +1.0 50,472 - BT0054 0.41 -0.1 50,475 - BT0054 0.41 -0.9 50,475 - BT0054 0.41 -0.7 50,540 + BT0054 0.47 +1.0 50,541 - BT0054 0.47 +0.8 50,557 - BT0054 0.49 -1.0 50,609 + BT0054 0.53 -1.6 50,648 + BT0054 0.57 +1.0 50,794 + BT0054 0.70 -0.7 50,797 - BT0054 0.70 +1.4 50,797 - BT0054 0.70 -1.3 50,802 + BT0054 0.70 +0.3 50,816 - BT0054 0.72 -1.3 50,825 - BT0054 0.73 +0.0 50,846 + BT0054 0.74 +1.0 50,943 + BT0054 0.83 +2.6 50,944 - BT0054 0.83 -0.3 50,971 + BT0054 0.86 +2.0 51,036 + +0.0 51,037 - +0.0 51,080 - -1.0 51,080 - -1.8 51,080 - -0.6 51,168 - -2.0 51,211 - -2.0 51,217 + +1.3 51,355 - BT0055 0.19 +2.6 51,490 - BT0055 0.31 -1.0 51,532 + BT0055 0.35 +2.3 51,580 - BT0055 0.39 -0.3 51,582 - BT0055 0.40 -1.7 51,586 - BT0055 0.40 -0.6 51,714 + BT0055 0.51 +0.0 51,715 - BT0055 0.52 +3.0 51,715 - BT0055 0.52 +0.0 51,792 - BT0055 0.58 +0.4 51,792 - +0.3 51,825 - BT0055 0.61 -0.3 52,027 - BT0055 0.79 +1.0 52,027 - BT0055 0.79 -0.9 52,205 - +0.0 52,205 - -0.6 52,282 - +0.0 52,284 - -1.3 52,400 + BT0056 0.12 -1.0 52,416 + BT0056 0.14 +0.0 52,444 + BT0056 0.16 +0.0 52,444 + BT0056 0.16 +1.0 52,527 - BT0056 0.25 -1.6 52,527 - BT0056 0.25 +0.7 52,587 - BT0056 0.30 -1.0 52,721 + BT0056 0.43 +1.0 52,721 + BT0056 0.43 -0.3 52,721 + BT0056 0.43 -1.6 52,764 - BT0056 0.48 -1.0 52,794 - BT0056 0.51 +0.0 52,931 - BT0056 0.64 +2.0 52,931 - BT0056 0.64 +0.0 53,086 + BT0056 0.79 +3.8 53,114 + BT0056 0.82 -3.0 53,121 + BT0056 0.83 -0.6 53,123 + BT0056 0.83 +1.0 53,124 - BT0056 0.83 +0.4 53,126 - BT0056 0.83 +0.0 53,150 - BT0056 0.85 -2.1 53,221 - -1.0 53,233 - +0.0
Or see this region's nucleotide sequence