Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0259

Experiment: Stool_Day7_Mouse4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0258 and BT0259 are separated by 139 nucleotidesBT0259 and BT0260 are separated by 122 nucleotidesBT0260 and BT0261 are separated by 8 nucleotides BT0258: BT0258 - glucosamine-6-phosphate isomerase (NCBI ptt file), at 288,339 to 290,330 BT0258 BT0259: BT0259 - putative amidohydrolase (NCBI ptt file), at 290,470 to 291,255 BT0259 BT0260: BT0260 - acyltransferase family protein (NCBI ptt file), at 291,378 to 291,932 BT0260 BT0261: BT0261 - hypothetical protein (NCBI ptt file), at 291,941 to 292,210 BT0261 Position (kb) 290 291 292Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 289.544 kb on - strand, within BT0258at 289.605 kb on - strand, within BT0258at 289.628 kb on - strand, within BT0258at 289.629 kb on + strand, within BT0258at 289.629 kb on + strand, within BT0258at 289.652 kb on + strand, within BT0258at 289.741 kb on - strand, within BT0258at 289.796 kb on + strand, within BT0258at 289.797 kb on - strand, within BT0258at 289.874 kb on - strand, within BT0258at 289.918 kb on - strand, within BT0258at 289.918 kb on - strand, within BT0258at 289.919 kb on + strand, within BT0258at 289.985 kb on + strand, within BT0258at 289.986 kb on - strand, within BT0258at 289.986 kb on - strand, within BT0258at 289.986 kb on - strand, within BT0258at 290.009 kb on - strand, within BT0258at 290.009 kb on - strand, within BT0258at 290.014 kb on + strand, within BT0258at 290.014 kb on + strand, within BT0258at 290.015 kb on - strand, within BT0258at 290.018 kb on + strand, within BT0258at 290.060 kb on + strand, within BT0258at 290.102 kb on + strand, within BT0258at 290.119 kb on - strand, within BT0258at 290.166 kb on + strandat 290.209 kb on + strandat 290.209 kb on + strandat 290.210 kb on - strandat 290.220 kb on - strandat 290.275 kb on + strandat 290.275 kb on + strandat 290.275 kb on + strandat 290.278 kb on + strandat 290.315 kb on + strandat 290.316 kb on - strandat 290.343 kb on + strandat 290.344 kb on - strandat 290.348 kb on + strandat 290.349 kb on - strandat 290.352 kb on + strandat 290.352 kb on + strandat 290.353 kb on - strandat 290.405 kb on + strandat 290.413 kb on + strandat 290.420 kb on + strandat 290.420 kb on + strandat 290.432 kb on - strandat 290.432 kb on - strandat 290.662 kb on - strand, within BT0259at 290.665 kb on + strand, within BT0259at 290.765 kb on + strand, within BT0259at 290.773 kb on + strand, within BT0259at 290.773 kb on + strand, within BT0259at 290.774 kb on - strand, within BT0259at 290.825 kb on + strand, within BT0259at 290.826 kb on - strand, within BT0259at 290.826 kb on - strand, within BT0259at 290.844 kb on + strand, within BT0259at 290.865 kb on + strand, within BT0259at 290.984 kb on + strand, within BT0259at 290.985 kb on - strand, within BT0259at 291.007 kb on - strand, within BT0259at 291.009 kb on - strand, within BT0259at 291.094 kb on - strand, within BT0259at 291.133 kb on + strand, within BT0259at 291.229 kb on + strandat 291.232 kb on + strandat 291.268 kb on - strandat 291.272 kb on - strandat 291.285 kb on + strandat 291.288 kb on + strandat 291.295 kb on + strandat 291.296 kb on - strandat 291.296 kb on - strandat 291.299 kb on + strandat 291.306 kb on + strandat 291.307 kb on - strandat 291.355 kb on - strandat 291.355 kb on - strandat 291.362 kb on - strandat 291.365 kb on + strandat 291.366 kb on - strandat 291.369 kb on - strandat 291.864 kb on - strand, within BT0260at 292.010 kb on - strand, within BT0261at 292.118 kb on - strand, within BT0261at 292.136 kb on - strand, within BT0261at 292.174 kb on - strand, within BT0261at 292.174 kb on - strand, within BT0261at 292.234 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stool_Day7_Mouse4
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289,544 - BT0258 0.60 -1.1
289,605 - BT0258 0.64 -0.9
289,628 - BT0258 0.65 -0.1
289,629 + BT0258 0.65 -0.6
289,629 + BT0258 0.65 -1.1
289,652 + BT0258 0.66 -1.1
289,741 - BT0258 0.70 -3.1
289,796 + BT0258 0.73 -2.5
289,797 - BT0258 0.73 -2.8
289,874 - BT0258 0.77 -2.4
289,918 - BT0258 0.79 +0.9
289,918 - BT0258 0.79 -2.1
289,919 + BT0258 0.79 -2.1
289,985 + BT0258 0.83 -0.6
289,986 - BT0258 0.83 -1.9
289,986 - BT0258 0.83 -4.6
289,986 - BT0258 0.83 -1.4
290,009 - BT0258 0.84 -1.3
290,009 - BT0258 0.84 -3.0
290,014 + BT0258 0.84 -0.1
290,014 + BT0258 0.84 -0.4
290,015 - BT0258 0.84 -2.2
290,018 + BT0258 0.84 -0.6
290,060 + BT0258 0.86 -1.5
290,102 + BT0258 0.89 -3.1
290,119 - BT0258 0.89 -0.6
290,166 + +0.9
290,209 + -0.1
290,209 + -3.4
290,210 - -1.6
290,220 - +0.9
290,275 + -1.4
290,275 + +0.9
290,275 + -0.1
290,278 + -1.1
290,315 + -0.6
290,316 - -1.7
290,343 + -1.9
290,344 - +0.4
290,348 + -1.1
290,349 - -0.6
290,352 + -2.2
290,352 + -1.1
290,353 - +0.5
290,405 + -0.6
290,413 + -0.6
290,420 + -0.1
290,420 + -0.6
290,432 - -1.4
290,432 - -1.1
290,662 - BT0259 0.24 -1.6
290,665 + BT0259 0.25 -1.4
290,765 + BT0259 0.38 -1.6
290,773 + BT0259 0.39 -0.1
290,773 + BT0259 0.39 -2.5
290,774 - BT0259 0.39 -1.4
290,825 + BT0259 0.45 -1.6
290,826 - BT0259 0.45 +0.9
290,826 - BT0259 0.45 +0.9
290,844 + BT0259 0.48 -1.8
290,865 + BT0259 0.50 -0.1
290,984 + BT0259 0.65 -0.1
290,985 - BT0259 0.66 -0.6
291,007 - BT0259 0.68 -1.1
291,009 - BT0259 0.69 -0.3
291,094 - BT0259 0.79 -1.7
291,133 + BT0259 0.84 -1.9
291,229 + -0.4
291,232 + -2.0
291,268 - -1.6
291,272 - -1.1
291,285 + -0.2
291,288 + -0.1
291,295 + -1.1
291,296 - +1.9
291,296 - -2.1
291,299 + -0.4
291,306 + -0.6
291,307 - -2.5
291,355 - -0.5
291,355 - -1.1
291,362 - +0.4
291,365 + -0.9
291,366 - -0.1
291,369 - +1.9
291,864 - BT0260 0.88 -1.6
292,010 - BT0261 0.26 -1.9
292,118 - BT0261 0.66 -0.4
292,136 - BT0261 0.72 -0.6
292,174 - BT0261 0.86 -3.4
292,174 - BT0261 0.86 -1.6
292,234 - +0.4

Or see this region's nucleotide sequence