Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3059

Experiment: Stool_Day7_Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stool_Day7_Mouse2
3,879,997	+		BT3058	0.11	-0.2
3,880,003	+		BT3058	0.12	+2.0
3,880,008	+		BT3058	0.12	+1.0
3,880,008	+		BT3058	0.12	-0.4
3,880,009	-		BT3058	0.13	-0.3
3,880,052	+		BT3058	0.18	-0.1
3,880,062	-		BT3058	0.19	-0.0
3,880,101	+		BT3058	0.23	-0.4
3,880,102	-		BT3058	0.24	-0.8
3,880,107	-		BT3058	0.24	-0.6
3,880,136	+		BT3058	0.28	-0.8
3,880,136	+		BT3058	0.28	-1.7
3,880,137	-		BT3058	0.28	-0.5
3,880,137	-		BT3058	0.28	-0.0
3,880,137	-		BT3058	0.28	-2.3
3,880,137	-		BT3058	0.28	-1.6
3,880,138	+		BT3058	0.28	-2.0
3,880,182	-		BT3058	0.33	+1.0
3,880,184	-		BT3058	0.33	+1.0
3,880,219	+		BT3058	0.37	-1.8
3,880,219	+		BT3058	0.37	-0.6
3,880,255	+		BT3058	0.42	-0.0
3,880,271	-		BT3058	0.44	-0.6
3,880,278	+		BT3058	0.44	-0.6
3,880,278	+		BT3058	0.44	-0.5
3,880,328	+		BT3058	0.50	+0.2
3,880,384	-		BT3058	0.57	-1.4
3,880,389	+		BT3058	0.58	-1.4
3,880,389	+		BT3058	0.58	+1.4
3,880,427	+		BT3058	0.62	-0.0
3,880,427	+		BT3058	0.62	-0.6
3,880,430	+		BT3058	0.63	-1.4
3,880,431	-		BT3058	0.63	-0.7
3,880,456	-		BT3058	0.66	-1.8
3,880,477	+		BT3058	0.68	+0.4
3,880,481	-		BT3058	0.69	-4.5
3,880,481	-		BT3058	0.69	-3.3
3,880,481	-		BT3058	0.69	+1.0
3,880,484	+		BT3058	0.69	-1.0
3,880,484	+		BT3058	0.69	-3.3
3,880,485	-		BT3058	0.69	-0.0
3,880,541	+		BT3058	0.76	-0.7
3,880,593	+		BT3058	0.82	-3.7
3,880,593	+		BT3058	0.82	-1.9
3,880,593	+		BT3058	0.82	-1.5
3,880,594	-		BT3058	0.82	-2.5
3,880,594	-		BT3058	0.82	-0.6
3,880,594	-		BT3058	0.82	+0.6
3,880,606	-		BT3058	0.83	-0.0
3,880,606	-		BT3058	0.83	+0.6
3,880,670	+				-0.6
3,880,682	+				-0.3
3,880,683	-				-0.4
3,880,683	-				-1.9
3,880,693	-				-0.3
3,880,724	+				+1.0
3,880,725	-				-0.6
3,880,736	+				-1.4
3,880,745	+				-2.9
3,880,746	-				-0.7
3,880,746	-				-2.1
3,880,746	-				-0.6
3,880,746	-				-1.2
3,880,747	+				-1.4
3,880,747	+				-1.8
3,880,748	-				-1.9
3,880,790	+				+1.0
3,880,804	+				+1.0
3,880,806	+				+1.0
3,880,854	+				-2.9
3,880,854	+				+0.2
3,880,854	+				+0.4
3,880,915	-				-0.0
3,880,934	+				-0.4
3,880,935	-				-0.0
3,880,935	-				-0.2
3,880,937	+				-2.6
3,881,010	+				-1.8
3,881,010	+				+0.2
3,881,011	-				-1.8
3,881,042	+		BT3059	0.10	-0.8
3,881,042	+		BT3059	0.10	-0.3
3,881,113	-		BT3059	0.17	+1.0
3,881,114	+		BT3059	0.17	-1.0
3,881,115	-		BT3059	0.18	-0.1
3,881,116	+				-0.6
3,881,117	-		BT3059	0.18	-0.6
3,881,120	+		BT3059	0.18	-1.0
3,881,121	-		BT3059	0.18	-1.4
3,881,141	-		BT3059	0.20	-0.0
3,881,144	+		BT3059	0.21	-0.3
3,881,151	+		BT3059	0.21	-0.0
3,881,152	-		BT3059	0.21	-1.6
3,881,165	+				+1.0
3,881,236	-		BT3059	0.30	-1.1
3,881,242	+		BT3059	0.31	+0.8
3,881,243	-		BT3059	0.31	+1.0
3,881,243	-		BT3059	0.31	-0.2
3,881,243	-		BT3059	0.31	+1.3
3,881,243	-		BT3059	0.31	+0.1
3,881,246	+		BT3059	0.31	-1.6
3,881,246	+		BT3059	0.31	-0.0
3,881,246	+		BT3059	0.31	-1.0
3,881,246	+		BT3059	0.31	-2.7
3,881,247	-		BT3059	0.31	-0.4
3,881,247	-		BT3059	0.31	-0.6
3,881,247	-		BT3059	0.31	+0.1
3,881,247	-		BT3059	0.31	-1.1
3,881,247	-		BT3059	0.31	-1.6
3,881,247	-		BT3059	0.31	-1.4
3,881,248	+		BT3059	0.31	+0.6
3,881,248	+		BT3059	0.31	-1.6
3,881,248	+		BT3059	0.31	+1.0
3,881,298	-		BT3059	0.36	+1.0
3,881,299	+		BT3059	0.36	+1.0
3,881,321	+		BT3059	0.39	-2.1
3,881,331	+		BT3059	0.40	-2.3
3,881,331	+		BT3059	0.40	-0.6
3,881,337	-		BT3059	0.40	-0.4
3,881,345	+		BT3059	0.41	-0.0
3,881,366	+		BT3059	0.43	-0.6
3,881,368	+		BT3059	0.43	+1.0
3,881,369	-		BT3059	0.44	-0.6
3,881,369	-		BT3059	0.44	-1.4
3,881,399	+		BT3059	0.47	-0.6
3,881,450	+		BT3059	0.52	-0.1
3,881,491	-		BT3059	0.56	+0.1
3,881,525	+		BT3059	0.60	-1.6
3,881,525	+		BT3059	0.60	-0.6
3,881,532	-		BT3059	0.60	-0.3
3,881,553	-		BT3059	0.62	-0.0
3,881,570	+		BT3059	0.64	-1.8
3,881,570	+		BT3059	0.64	+0.0
3,881,571	-		BT3059	0.64	-0.0
3,881,572	+		BT3059	0.64	-1.8
3,881,573	-		BT3059	0.65	-1.8
3,881,576	+		BT3059	0.65	+0.1
3,881,577	-		BT3059	0.65	-1.2
3,881,623	-				+0.6
3,881,623	-		BT3059	0.70	+0.1
3,881,623	-		BT3059	0.70	+1.0
3,881,635	+		BT3059	0.71	-0.6
3,881,635	+		BT3059	0.71	-0.0
3,881,661	-		BT3059	0.74	-2.0
3,881,668	+		BT3059	0.74	-0.4
3,881,669	-		BT3059	0.74	-0.8
3,881,669	-		BT3059	0.74	+1.0
3,881,669	-		BT3059	0.74	-2.3
3,881,669	-		BT3059	0.74	-0.3
3,881,678	+		BT3059	0.75	-1.0
3,881,681	+		BT3059	0.76	-0.2
3,881,682	-		BT3059	0.76	-1.0
3,881,682	-		BT3059	0.76	+1.0
3,881,718	-		BT3059	0.79	-0.9
3,881,718	-		BT3059	0.79	+1.0
3,881,877	-				-0.6
3,881,877	-				-0.4
3,881,877	-				-0.4
3,881,943	-				+2.0
3,881,948	+				+1.0
3,881,951	-				-1.9
3,881,964	+				+0.4
3,881,964	+				-0.8
3,882,136	+		BT3060	0.18	+0.2
3,882,157	+		BT3060	0.21	-1.2
3,882,173	-		BT3060	0.22	+1.0
3,882,204	-		BT3060	0.26	-1.1
3,882,204	-		BT3060	0.26	-0.0
3,882,293	+		BT3060	0.35	-1.6
3,882,329	-		BT3060	0.39	-0.6
3,882,383	-		BT3060	0.45	-1.9
3,882,415	-		BT3060	0.49	-1.7
3,882,415	-		BT3060	0.49	-0.0
3,882,506	+		BT3060	0.59	-1.2
3,882,512	+		BT3060	0.59	+1.0
3,882,513	-		BT3060	0.59	-1.9
3,882,530	+		BT3060	0.61	-1.4
3,882,534	+		BT3060	0.62	-1.0
3,882,535	-		BT3060	0.62	-0.0
3,882,535	-		BT3060	0.62	-1.0
3,882,555	-		BT3060	0.64	-0.6
3,882,602	-		BT3060	0.69	-2.3
3,882,621	+		BT3060	0.71	-1.0
3,882,660	+		BT3060	0.76	-1.7
3,882,661	-		BT3060	0.76	-1.4
3,882,661	-		BT3060	0.76	-0.5
3,882,661	-		BT3060	0.76	+0.4
3,882,666	+		BT3060	0.76	-0.6
3,882,667	-		BT3060	0.76	-1.4
3,882,727	-		BT3060	0.83	-1.0
3,882,730	+		BT3060	0.83	+1.6
3,882,731	-		BT3060	0.83	-1.7
3,882,821	+				+0.4
3,882,822	-				-1.2
3,882,822	-				-0.3
3,882,823	+				-0.2
3,882,824	-				-2.4
3,882,854	+				-0.7
3,882,911	+				-0.3
3,882,912	-				-1.4
3,882,912	-				+2.0
3,882,916	-				-0.8