Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3157

Experiment: Stool_Day7_Mouse1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stool_Day7_Mouse1
4,023,000	+		BT3156	0.69	-1.8
4,023,001	-		BT3156	0.69	+0.2
4,023,005	-		BT3156	0.69	-1.2
4,023,080	+		BT3156	0.71	-1.2
4,023,091	+		BT3156	0.72	+0.8
4,023,115	-		BT3156	0.72	-1.2
4,023,122	-		BT3156	0.73	-1.4
4,023,126	+		BT3156	0.73	-1.8
4,023,127	-		BT3156	0.73	-1.0
4,023,167	+		BT3156	0.74	+0.6
4,023,168	-		BT3156	0.74	+0.8
4,023,174	-		BT3156	0.74	+0.8
4,023,174	-		BT3156	0.74	-0.3
4,023,184	+		BT3156	0.75	-0.2
4,023,212	-		BT3156	0.75	-0.2
4,023,237	-		BT3156	0.76	-0.9
4,023,237	-		BT3156	0.76	+0.5
4,023,260	+		BT3156	0.77	+0.8
4,023,261	-		BT3156	0.77	+0.8
4,023,261	-		BT3156	0.77	+0.8
4,023,289	+		BT3156	0.78	-1.2
4,023,318	-		BT3156	0.79	-1.6
4,023,340	-		BT3156	0.80	-0.2
4,023,416	-		BT3156	0.82	-2.0
4,023,416	-		BT3156	0.82	-0.9
4,023,416	-		BT3156	0.82	-0.1
4,023,419	+		BT3156	0.82	+0.8
4,023,420	-		BT3156	0.82	-0.8
4,023,433	+		BT3156	0.82	-0.8
4,023,482	-		BT3156	0.84	-2.2
4,023,496	+		BT3156	0.84	+0.8
4,023,545	-		BT3156	0.86	+0.5
4,023,571	-		BT3156	0.87	-0.2
4,023,571	-		BT3156	0.87	+1.0
4,023,615	-		BT3156	0.88	-0.8
4,023,615	-		BT3156	0.88	-1.2
4,023,658	+		BT3156	0.90	-1.6
4,023,659	-		BT3156	0.90	-1.6
4,023,659	-		BT3156	0.90	-0.8
4,023,659	-		BT3156	0.90	-0.5
4,023,691	+				-4.3
4,023,696	+				-1.2
4,023,696	+				-1.2
4,023,717	+				-2.0
4,023,755	-				-0.1
4,023,811	+				-2.5
4,023,812	-				+0.9
4,023,812	-				-0.7
4,023,863	+				-0.2
4,023,864	-				-0.6
4,023,864	-				+0.8
4,023,878	-				-0.6
4,023,882	+				-0.2
4,023,883	-				-0.6
4,023,886	-				-0.3
4,023,886	-				+1.4
4,023,907	-				-0.1
4,023,937	-				-1.2
4,023,937	-				-0.1
4,023,942	-				-0.3
4,023,959	+				-3.1
4,023,960	-				-2.1
4,023,962	-				-0.1
4,023,962	-				-0.8
4,024,018	+				+0.2
4,024,019	-				-1.0
4,024,021	-				-0.5
4,024,073	+				-1.2
4,024,073	+				-0.8
4,024,073	+				-4.2
4,024,074	-				-0.2
4,024,074	-				-1.4
4,024,106	+				+0.8
4,024,106	+				-1.2
4,024,107	-				-0.6
4,024,107	-				+0.2
4,024,136	-				-1.6
4,024,222	+		BT3157	0.11	-2.2
4,024,223	-		BT3157	0.11	-1.5
4,024,224	+		BT3157	0.11	-0.2
4,024,225	-		BT3157	0.11	-1.5
4,024,225	-		BT3157	0.11	+0.8
4,024,231	-		BT3157	0.11	-1.8
4,024,234	-		BT3157	0.12	-3.4
4,024,266	+		BT3157	0.13	-1.6
4,024,300	+		BT3157	0.15	+0.8
4,024,357	-		BT3157	0.18	-1.0
4,024,357	-		BT3157	0.18	-2.7
4,024,365	+		BT3157	0.18	-1.2
4,024,365	+		BT3157	0.18	-1.8
4,024,366	-		BT3157	0.18	-2.9
4,024,369	-		BT3157	0.18	-0.8
4,024,381	+		BT3157	0.19	-0.2
4,024,386	-		BT3157	0.19	-0.2
4,024,399	-		BT3157	0.20	-1.3
4,024,449	-		BT3157	0.22	-1.8
4,024,454	+		BT3157	0.23	+0.1
4,024,493	-		BT3157	0.24	-0.6
4,024,506	+		BT3157	0.25	-2.4
4,024,511	+		BT3157	0.25	+0.1
4,024,530	-		BT3157	0.26	+0.2
4,024,551	-		BT3157	0.27	-0.6
4,024,580	+		BT3157	0.29	-1.0
4,024,588	+		BT3157	0.29	-0.5
4,024,589	-		BT3157	0.29	-0.0
4,024,596	-		BT3157	0.30	-1.1
4,024,604	+		BT3157	0.30	+0.8
4,024,704	-		BT3157	0.35	-0.2
4,024,719	+		BT3157	0.36	-0.3
4,024,747	+		BT3157	0.37	-1.6
4,024,748	-		BT3157	0.37	-3.9
4,024,748	-		BT3157	0.37	-0.6
4,024,844	+		BT3157	0.42	+0.0
4,024,901	-		BT3157	0.45	-0.8
4,024,902	+		BT3157	0.45	-0.8
4,024,903	-		BT3157	0.45	-1.2
4,024,931	-		BT3157	0.46	-0.2
4,024,969	-		BT3157	0.48	-0.8
4,024,983	-		BT3157	0.49	-0.8
4,025,037	+		BT3157	0.51	-0.7
4,025,038	-		BT3157	0.51	-0.7
4,025,078	+		BT3157	0.53	+0.6
4,025,079	-		BT3157	0.54	-0.8
4,025,114	+		BT3157	0.55	+0.8
4,025,115	-		BT3157	0.55	-1.3
4,025,115	-		BT3157	0.55	-0.5
4,025,115	-		BT3157	0.55	-3.1
4,025,115	-		BT3157	0.55	+0.6
4,025,116	+		BT3157	0.55	-0.2
4,025,116	+		BT3157	0.55	+0.0
4,025,117	-		BT3157	0.55	-1.6
4,025,124	+		BT3157	0.56	-0.1
4,025,124	+		BT3157	0.56	-0.9
4,025,124	+		BT3157	0.56	-2.8
4,025,125	-		BT3157	0.56	-1.0
4,025,150	-		BT3157	0.57	-2.2
4,025,154	+		BT3157	0.57	-0.6
4,025,212	-		BT3157	0.60	-0.7
4,025,251	+		BT3157	0.62	-0.8
4,025,252	-		BT3157	0.62	+0.8
4,025,254	-		BT3157	0.62	+0.8
4,025,282	+		BT3157	0.64	+0.3
4,025,312	-		BT3157	0.65	+0.6
4,025,344	+		BT3157	0.67	-1.5
4,025,344	+		BT3157	0.67	-1.6
4,025,359	-		BT3157	0.67	-2.0
4,025,384	+		BT3157	0.69	-0.5
4,025,391	+		BT3157	0.69	-1.6
4,025,396	-		BT3157	0.69	-0.2
4,025,428	-				-0.8
4,025,447	-		BT3157	0.72	+1.4
4,025,483	+		BT3157	0.74	-0.5
4,025,501	+		BT3157	0.74	-0.2
4,025,502	-		BT3157	0.75	+0.8
4,025,506	+		BT3157	0.75	+0.4
4,025,512	+		BT3157	0.75	+0.4
4,025,526	+		BT3157	0.76	+0.0
4,025,546	-		BT3157	0.77	-1.6
4,025,549	+		BT3157	0.77	+0.2
4,025,549	+		BT3157	0.77	-1.6
4,025,549	+		BT3157	0.77	-0.5
4,025,549	+		BT3157	0.77	-3.6
4,025,550	-		BT3157	0.77	-1.5
4,025,550	-		BT3157	0.77	-0.2
4,025,555	-		BT3157	0.77	-2.4
4,025,589	+		BT3157	0.79	+0.8
4,025,592	+		BT3157	0.79	-0.6
4,025,593	-		BT3157	0.79	-0.6
4,025,593	-		BT3157	0.79	-1.6
4,025,593	-		BT3157	0.79	+0.3
4,025,597	+		BT3157	0.79	+0.8
4,025,613	+		BT3157	0.80	+1.1
4,025,613	+		BT3157	0.80	+0.1
4,025,613	+		BT3157	0.80	-0.2
4,025,661	-		BT3157	0.82	+0.8
4,025,681	+		BT3157	0.83	-0.2
4,025,681	+		BT3157	0.83	-1.1
4,025,682	-		BT3157	0.83	-0.6
4,025,682	-		BT3157	0.83	-0.4
4,025,682	-		BT3157	0.83	-1.2
4,025,682	-		BT3157	0.83	-0.0
4,025,697	-		BT3157	0.84	+0.9
4,025,757	+		BT3157	0.87	+0.8
4,025,757	+		BT3157	0.87	-0.8
4,025,775	+		BT3157	0.88	+0.4
4,025,806	+		BT3157	0.90	-0.2
4,025,940	+				-1.4
4,025,975	+				-3.4
4,026,053	+				+0.8
4,026,054	-				-1.2
4,026,056	+				-1.8
4,026,057	-				-1.7
4,026,058	+				-1.6
4,026,058	+				+0.8
4,026,058	+				+0.2
4,026,059	-				-1.6
4,026,060	+				+0.0
4,026,060	+				+0.8
4,026,061	-				-2.3
4,026,088	-				-0.1
4,026,156	+		BT3158	0.10	-1.5
4,026,156	+		BT3158	0.10	-0.6
4,026,156	+		BT3158	0.10	-0.7
4,026,157	-		BT3158	0.10	+0.2
4,026,171	-		BT3158	0.11	+0.4
4,026,234	-		BT3158	0.16	-1.8
4,026,234	-		BT3158	0.16	-0.8
4,026,234	-		BT3158	0.16	+0.1
4,026,234	-		BT3158	0.16	-1.5
4,026,236	-		BT3158	0.17	+0.8
4,026,248	+		BT3158	0.18	-1.3
4,026,346	-		BT3158	0.26	-1.4
4,026,348	+		BT3158	0.26	-0.4
4,026,389	-		BT3158	0.29	-0.8
4,026,406	-		BT3158	0.31	+0.8
4,026,422	+		BT3158	0.32	-0.2
4,026,422	+		BT3158	0.32	-0.8
4,026,423	-		BT3158	0.32	-0.2
4,026,450	+		BT3158	0.34	-2.1
4,026,451	-		BT3158	0.34	-2.0
4,026,451	-		BT3158	0.34	-1.0
4,026,474	-		BT3158	0.36	-0.6
4,026,474	-		BT3158	0.36	-0.8
4,026,474	-		BT3158	0.36	+0.4
4,026,477	+		BT3158	0.37	+1.2
4,026,478	-		BT3158	0.37	-0.4
4,026,481	+		BT3158	0.37	+0.2
4,026,482	-		BT3158	0.37	-0.4
4,026,484	+		BT3158	0.37	-0.2
4,026,504	-		BT3158	0.39	-0.2
4,026,552	+		BT3158	0.43	-0.6
4,026,553	-		BT3158	0.43	-0.8
4,026,559	+		BT3158	0.43	-0.2
4,026,559	+		BT3158	0.43	-1.8
4,026,566	+		BT3158	0.44	-1.9
4,026,648	+		BT3158	0.51	+0.8
4,026,649	-		BT3158	0.51	-2.7
4,026,650	+		BT3158	0.51	-1.0
4,026,672	-		BT3158	0.53	-1.2
4,026,696	-		BT3158	0.55	-0.9
4,026,748	+		BT3158	0.59	-1.6
4,026,748	+		BT3158	0.59	-0.7
4,026,750	+		BT3158	0.59	-1.2
4,026,750	+		BT3158	0.59	-0.2
4,026,750	+		BT3158	0.59	+0.4
4,026,751	-		BT3158	0.59	+0.8
4,026,752	-		BT3158	0.59	-0.2
4,026,787	-		BT3158	0.62	-0.2
4,026,807	+		BT3158	0.64	+1.2
4,026,808	-		BT3158	0.64	-0.8
4,026,822	-		BT3158	0.65	+0.8
4,026,898	-		BT3158	0.71	-1.6
4,026,934	+		BT3158	0.74	-1.0
4,026,935	-		BT3158	0.74	-0.2
4,026,938	+		BT3158	0.75	-2.0
4,026,938	+		BT3158	0.75	+0.8
4,026,938	+		BT3158	0.75	+0.5
4,026,939	-		BT3158	0.75	-0.2
4,026,939	-		BT3158	0.75	+0.2
4,026,941	+		BT3158	0.75	-2.4
4,026,941	+				+0.8
4,026,942	-		BT3158	0.75	-2.2
4,026,945	-		BT3158	0.75	-1.2
4,026,993	+		BT3158	0.79	-3.3