Experiment: Stool_Day6_Mouse17
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0502 and BT0503 are separated by 121 nucleotides BT0503 and BT0504 are separated by 96 nucleotides
BT0502: BT0502 - TonB-dependent outer membrane receptor (NCBI ptt file), at 620,545 to 622,872
BT0502
BT0503: BT0503 - hypothetical protein (NCBI ptt file), at 622,994 to 623,335
BT0503
BT0504: BT0504 - TonB-dependent outer membrane receptor (NCBI ptt file), at 623,432 to 625,771
BT0504
Position (kb) 622
623
624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 622.018 kb on - strand, within BT0502 at 622.036 kb on - strand, within BT0502 at 622.100 kb on - strand, within BT0502 at 622.221 kb on - strand, within BT0502 at 622.237 kb on - strand, within BT0502 at 622.237 kb on - strand, within BT0502 at 622.240 kb on + strand, within BT0502 at 622.354 kb on - strand, within BT0502 at 622.360 kb on + strand, within BT0502 at 622.362 kb on + strand, within BT0502 at 622.555 kb on + strand, within BT0502 at 622.556 kb on - strand, within BT0502 at 622.597 kb on + strand, within BT0502 at 622.597 kb on + strand, within BT0502 at 622.597 kb on + strand, within BT0502 at 622.962 kb on - strand at 623.143 kb on + strand, within BT0503 at 623.143 kb on + strand, within BT0503 at 623.143 kb on + strand, within BT0503 at 623.179 kb on - strand, within BT0503 at 623.188 kb on + strand, within BT0503 at 623.397 kb on + strand at 623.397 kb on + strand at 623.463 kb on + strand at 623.464 kb on - strand at 623.579 kb on + strand at 623.585 kb on - strand at 623.610 kb on + strand at 623.929 kb on - strand, within BT0504 at 623.992 kb on + strand, within BT0504 at 624.001 kb on - strand, within BT0504 at 624.085 kb on - strand, within BT0504 at 624.148 kb on + strand, within BT0504 at 624.324 kb on - strand, within BT0504
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day6_Mouse17 remove 622,018 - BT0502 0.63 +0.8 622,036 - BT0502 0.64 -1.0 622,100 - BT0502 0.67 -1.2 622,221 - BT0502 0.72 +0.8 622,237 - BT0502 0.73 -1.2 622,237 - BT0502 0.73 +0.3 622,240 + BT0502 0.73 +0.2 622,354 - BT0502 0.78 -0.2 622,360 + BT0502 0.78 -2.3 622,362 + BT0502 0.78 -0.8 622,555 + BT0502 0.86 -0.2 622,556 - BT0502 0.86 +0.8 622,597 + BT0502 0.88 -1.2 622,597 + BT0502 0.88 +2.4 622,597 + BT0502 0.88 -1.5 622,962 - +2.4 623,143 + BT0503 0.44 -1.8 623,143 + BT0503 0.44 -0.2 623,143 + BT0503 0.44 -3.0 623,179 - BT0503 0.54 -2.2 623,188 + BT0503 0.57 +0.8 623,397 + +0.1 623,397 + +1.8 623,463 + -0.2 623,464 - -0.2 623,579 + -1.5 623,585 - +1.2 623,610 + -0.2 623,929 - BT0504 0.21 +0.8 623,992 + BT0504 0.24 +0.8 624,001 - BT0504 0.24 -1.1 624,085 - BT0504 0.28 -0.5 624,148 + BT0504 0.31 +0.3 624,324 - BT0504 0.38 -0.8
Or see this region's nucleotide sequence