Experiment: Stool_Day6_Mouse17
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0351 and BT0352 are separated by 80 nucleotides BT0352 and BT0353 are separated by 36 nucleotides BT0353 and BT0354 are separated by 5 nucleotides
BT0351: BT0351 - L-arabinose isomerase (NCBI ptt file), at 423,634 to 425,163
BT0351
BT0352: BT0352 - conserved hypothetical protein (NCBI ptt file), at 425,244 to 425,606
BT0352
BT0353: BT0353 - putative sugar epimerase/aldolase (NCBI ptt file), at 425,643 to 426,326
BT0353
BT0354: BT0354 - conserved hypothetical protein (NCBI ptt file), at 426,332 to 427,009
BT0354
Position (kb) 425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 424.451 kb on + strand, within BT0351 at 424.468 kb on - strand, within BT0351 at 424.471 kb on + strand, within BT0351 at 424.484 kb on - strand, within BT0351 at 424.597 kb on + strand, within BT0351 at 424.603 kb on - strand, within BT0351 at 424.686 kb on + strand, within BT0351 at 424.755 kb on + strand, within BT0351 at 424.756 kb on - strand, within BT0351 at 424.989 kb on + strand, within BT0351 at 424.990 kb on - strand, within BT0351 at 425.013 kb on - strand at 425.022 kb on + strand at 425.068 kb on - strand at 425.125 kb on + strand at 425.142 kb on - strand at 425.169 kb on - strand at 425.271 kb on - strand at 425.338 kb on + strand, within BT0352 at 425.368 kb on + strand, within BT0352 at 425.397 kb on + strand, within BT0352 at 425.580 kb on + strand at 425.784 kb on + strand, within BT0353 at 425.785 kb on - strand, within BT0353 at 425.849 kb on + strand, within BT0353 at 425.881 kb on - strand, within BT0353 at 426.031 kb on + strand, within BT0353 at 426.035 kb on + strand, within BT0353 at 426.084 kb on + strand, within BT0353 at 426.085 kb on - strand, within BT0353 at 426.101 kb on + strand, within BT0353 at 426.102 kb on - strand, within BT0353 at 426.177 kb on - strand, within BT0353 at 426.254 kb on + strand, within BT0353 at 426.326 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day6_Mouse17 remove 424,451 + BT0351 0.53 -0.3 424,468 - BT0351 0.55 +1.3 424,471 + BT0351 0.55 -0.3 424,484 - BT0351 0.56 -0.3 424,597 + BT0351 0.63 -0.3 424,603 - BT0351 0.63 +0.7 424,686 + BT0351 0.69 -0.3 424,755 + BT0351 0.73 -3.7 424,756 - BT0351 0.73 -3.4 424,989 + BT0351 0.89 -3.6 424,990 - BT0351 0.89 -3.3 425,013 - +0.7 425,022 + -2.5 425,068 - -1.6 425,125 + -3.2 425,142 - -1.6 425,169 - -2.8 425,271 - -1.0 425,338 + BT0352 0.26 -1.3 425,368 + BT0352 0.34 -0.9 425,397 + BT0352 0.42 -1.6 425,580 + -2.3 425,784 + BT0353 0.21 +0.7 425,785 - BT0353 0.21 -0.3 425,849 + BT0353 0.30 -3.1 425,881 - BT0353 0.35 -3.2 426,031 + BT0353 0.57 -1.6 426,035 + BT0353 0.57 -0.6 426,084 + BT0353 0.64 -1.3 426,085 - BT0353 0.65 -1.3 426,101 + BT0353 0.67 -1.9 426,102 - BT0353 0.67 -2.8 426,177 - BT0353 0.78 -3.2 426,254 + BT0353 0.89 -1.3 426,326 + +0.7
Or see this region's nucleotide sequence