Experiment: Stool_Day6_Mouse15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0537 and BT0538 overlap by 11 nucleotides BT0538 and BT0539 are separated by 170 nucleotides BT0539 and BT0540 are separated by 766 nucleotides
BT0537: BT0537 - conserved hypothetical protein (NCBI ptt file), at 660,038 to 661,102
BT0537
BT0538: BT0538 - hypothetical protein (NCBI ptt file), at 661,092 to 661,277
BT0538
BT0539: BT0539 - putative Na+/sulphate transporter (NCBI ptt file), at 661,448 to 663,307
BT0539
BT0540: BT0540 - putative exopolyphosphatase (NCBI ptt file), at 664,074 to 664,991
BT0540
Position (kb) 661
662
663
664 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 660.479 kb on + strand, within BT0537 at 660.501 kb on + strand, within BT0537 at 660.524 kb on + strand, within BT0537 at 660.533 kb on + strand, within BT0537 at 660.671 kb on + strand, within BT0537 at 660.732 kb on - strand, within BT0537 at 660.796 kb on - strand, within BT0537 at 660.818 kb on + strand, within BT0537 at 660.871 kb on - strand, within BT0537 at 660.874 kb on - strand, within BT0537 at 660.902 kb on + strand, within BT0537 at 660.925 kb on + strand, within BT0537 at 661.000 kb on - strand at 661.069 kb on + strand at 661.090 kb on + strand at 661.091 kb on - strand at 661.414 kb on + strand at 661.448 kb on - strand at 661.502 kb on - strand at 661.528 kb on - strand at 661.560 kb on + strand at 661.564 kb on - strand at 661.643 kb on - strand, within BT0539 at 661.672 kb on - strand, within BT0539 at 661.687 kb on + strand, within BT0539 at 661.729 kb on + strand, within BT0539 at 661.729 kb on + strand, within BT0539 at 661.730 kb on - strand, within BT0539 at 661.730 kb on - strand, within BT0539 at 661.870 kb on + strand, within BT0539 at 662.027 kb on - strand, within BT0539 at 662.063 kb on - strand, within BT0539 at 662.063 kb on - strand, within BT0539 at 662.086 kb on - strand, within BT0539 at 662.144 kb on - strand, within BT0539 at 662.206 kb on + strand at 662.206 kb on + strand, within BT0539 at 662.261 kb on - strand, within BT0539 at 662.291 kb on - strand, within BT0539 at 662.291 kb on - strand, within BT0539 at 662.309 kb on - strand, within BT0539 at 662.315 kb on + strand, within BT0539 at 662.360 kb on + strand, within BT0539 at 662.455 kb on - strand, within BT0539 at 662.555 kb on + strand, within BT0539 at 662.556 kb on - strand, within BT0539 at 662.556 kb on - strand, within BT0539 at 662.701 kb on - strand, within BT0539 at 662.735 kb on - strand, within BT0539 at 662.806 kb on - strand, within BT0539 at 662.981 kb on + strand, within BT0539 at 663.034 kb on + strand, within BT0539 at 663.035 kb on - strand, within BT0539 at 663.109 kb on + strand, within BT0539 at 663.151 kb on + strand at 663.151 kb on + strand at 663.152 kb on - strand at 663.214 kb on + strand at 663.214 kb on + strand at 663.215 kb on - strand at 663.215 kb on - strand at 663.220 kb on + strand at 663.231 kb on + strand at 663.231 kb on + strand at 663.237 kb on + strand at 663.256 kb on + strand at 663.256 kb on + strand at 663.277 kb on - strand at 663.312 kb on + strand at 663.323 kb on + strand at 663.386 kb on - strand at 663.392 kb on - strand at 663.529 kb on - strand at 663.644 kb on + strand at 663.652 kb on - strand at 663.666 kb on + strand at 663.728 kb on - strand at 663.801 kb on + strand at 663.992 kb on - strand at 664.100 kb on + strand at 664.155 kb on - strand at 664.155 kb on - strand at 664.159 kb on - strand at 664.159 kb on - strand at 664.188 kb on - strand, within BT0540 at 664.251 kb on - strand, within BT0540 at 664.251 kb on - strand, within BT0540 at 664.263 kb on - strand, within BT0540
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day6_Mouse15 remove 660,479 + BT0537 0.41 -1.0 660,501 + BT0537 0.43 -0.9 660,524 + BT0537 0.46 +0.7 660,533 + BT0537 0.46 -0.0 660,671 + BT0537 0.59 -0.0 660,732 - BT0537 0.65 -1.1 660,796 - BT0537 0.71 +2.0 660,818 + BT0537 0.73 -0.6 660,871 - BT0537 0.78 +3.0 660,874 - BT0537 0.78 -1.2 660,902 + BT0537 0.81 -0.6 660,925 + BT0537 0.83 -1.0 661,000 - -1.3 661,069 + +1.0 661,090 + -1.2 661,091 - -2.3 661,414 + -0.0 661,448 - -0.3 661,502 - -0.7 661,528 - -0.0 661,560 + -1.6 661,564 - -0.4 661,643 - BT0539 0.10 -2.6 661,672 - BT0539 0.12 +1.0 661,687 + BT0539 0.13 +1.8 661,729 + BT0539 0.15 -1.3 661,729 + BT0539 0.15 -0.6 661,730 - BT0539 0.15 +1.0 661,730 - BT0539 0.15 -1.0 661,870 + BT0539 0.23 -0.6 662,027 - BT0539 0.31 -2.3 662,063 - BT0539 0.33 -0.0 662,063 - BT0539 0.33 +0.4 662,086 - BT0539 0.34 -0.0 662,144 - BT0539 0.37 -1.1 662,206 + -0.4 662,206 + BT0539 0.41 +1.2 662,261 - BT0539 0.44 -0.6 662,291 - BT0539 0.45 -1.8 662,291 - BT0539 0.45 +1.0 662,309 - BT0539 0.46 +0.7 662,315 + BT0539 0.47 -1.8 662,360 + BT0539 0.49 -0.0 662,455 - BT0539 0.54 -0.8 662,555 + BT0539 0.60 -1.5 662,556 - BT0539 0.60 +0.9 662,556 - BT0539 0.60 -0.0 662,701 - BT0539 0.67 -0.0 662,735 - BT0539 0.69 -0.6 662,806 - BT0539 0.73 +1.4 662,981 + BT0539 0.82 +0.9 663,034 + BT0539 0.85 +2.6 663,035 - BT0539 0.85 +1.6 663,109 + BT0539 0.89 -0.0 663,151 + -0.2 663,151 + -0.6 663,152 - +1.0 663,214 + +2.6 663,214 + +1.1 663,215 - -2.7 663,215 - -0.0 663,220 + +0.4 663,231 + -1.0 663,231 + -0.0 663,237 + -0.7 663,256 + -2.0 663,256 + +2.0 663,277 - +0.4 663,312 + +1.2 663,323 + -0.6 663,386 - -0.0 663,392 - -1.0 663,529 - +0.6 663,644 + -1.0 663,652 - -1.0 663,666 + -0.6 663,728 - -0.0 663,801 + +0.2 663,992 - -1.0 664,100 + -0.0 664,155 - +0.4 664,155 - -1.0 664,159 - -0.0 664,159 - -1.0 664,188 - BT0540 0.12 -2.4 664,251 - BT0540 0.19 -0.0 664,251 - BT0540 0.19 +1.0 664,263 - BT0540 0.21 -0.3
Or see this region's nucleotide sequence