Experiment: Stool_Day6_Mouse15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0348 and BT0349 are separated by 69 nucleotides BT0349 and BT0350 are separated by 104 nucleotides
BT0348: BT0348 - alpha-L-arabinofuranosidase (NCBI ptt file), at 417,722 to 419,266
BT0348
BT0349: BT0349 - conserved hypothetical protein (NCBI ptt file), at 419,336 to 421,744
BT0349
BT0350: BT0350 - ribulokinase (EC 2.7.1.16) <small>(from data)</small>, at 421,849 to 423,444
BT0350
Position (kb) 419
420
421
422 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 418.483 kb on + strand, within BT0348 at 418.488 kb on + strand, within BT0348 at 418.489 kb on - strand, within BT0348 at 418.535 kb on + strand, within BT0348 at 418.549 kb on + strand, within BT0348 at 418.551 kb on + strand, within BT0348 at 418.602 kb on + strand, within BT0348 at 418.602 kb on + strand, within BT0348 at 418.644 kb on + strand, within BT0348 at 418.648 kb on - strand, within BT0348 at 418.832 kb on + strand, within BT0348 at 418.835 kb on - strand, within BT0348 at 418.835 kb on - strand, within BT0348 at 419.031 kb on - strand, within BT0348 at 419.039 kb on - strand, within BT0348 at 419.107 kb on - strand, within BT0348 at 419.111 kb on - strand, within BT0348 at 419.289 kb on + strand at 419.293 kb on + strand at 419.345 kb on + strand at 419.557 kb on + strand at 419.592 kb on + strand, within BT0349 at 419.896 kb on + strand, within BT0349 at 420.058 kb on + strand, within BT0349 at 420.195 kb on + strand, within BT0349 at 420.256 kb on - strand, within BT0349 at 420.296 kb on + strand, within BT0349 at 420.332 kb on + strand, within BT0349 at 420.437 kb on - strand, within BT0349 at 420.468 kb on + strand, within BT0349 at 420.476 kb on - strand at 420.531 kb on + strand, within BT0349 at 420.630 kb on + strand, within BT0349 at 420.633 kb on + strand, within BT0349 at 420.720 kb on + strand, within BT0349 at 421.059 kb on - strand, within BT0349 at 421.115 kb on - strand, within BT0349 at 421.148 kb on - strand, within BT0349 at 421.249 kb on + strand, within BT0349 at 421.253 kb on - strand, within BT0349 at 421.253 kb on - strand, within BT0349 at 421.254 kb on + strand, within BT0349 at 421.255 kb on - strand, within BT0349 at 421.402 kb on + strand, within BT0349 at 421.403 kb on - strand, within BT0349 at 421.421 kb on + strand, within BT0349 at 421.422 kb on - strand, within BT0349 at 421.446 kb on + strand, within BT0349 at 421.446 kb on + strand, within BT0349 at 421.748 kb on - strand at 421.750 kb on + strand at 421.750 kb on + strand at 421.751 kb on - strand at 421.798 kb on - strand at 421.907 kb on + strand at 421.924 kb on + strand at 421.946 kb on - strand at 421.973 kb on - strand at 422.086 kb on + strand, within BT0350 at 422.234 kb on + strand, within BT0350 at 422.345 kb on + strand, within BT0350 at 422.423 kb on - strand, within BT0350 at 422.615 kb on - strand, within BT0350 at 422.651 kb on - strand, within BT0350
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day6_Mouse15 remove 418,483 + BT0348 0.49 -2.3 418,488 + BT0348 0.50 +2.9 418,489 - BT0348 0.50 -0.7 418,535 + BT0348 0.53 -1.4 418,549 + BT0348 0.54 -1.7 418,551 + BT0348 0.54 +0.9 418,602 + BT0348 0.57 -2.5 418,602 + BT0348 0.57 -0.7 418,644 + BT0348 0.60 -0.1 418,648 - BT0348 0.60 +0.9 418,832 + BT0348 0.72 -1.1 418,835 - BT0348 0.72 -0.2 418,835 - BT0348 0.72 +0.9 419,031 - BT0348 0.85 -0.2 419,039 - BT0348 0.85 +0.9 419,107 - BT0348 0.90 +0.2 419,111 - BT0348 0.90 -2.4 419,289 + +0.9 419,293 + -1.9 419,345 + +0.3 419,557 + +0.9 419,592 + BT0349 0.11 -1.1 419,896 + BT0349 0.23 -1.4 420,058 + BT0349 0.30 -2.7 420,195 + BT0349 0.36 +0.9 420,256 - BT0349 0.38 -1.7 420,296 + BT0349 0.40 -1.4 420,332 + BT0349 0.41 -2.0 420,437 - BT0349 0.46 -0.1 420,468 + BT0349 0.47 +0.9 420,476 - -0.1 420,531 + BT0349 0.50 -2.8 420,630 + BT0349 0.54 +0.3 420,633 + BT0349 0.54 -0.1 420,720 + BT0349 0.57 -1.6 421,059 - BT0349 0.72 -2.4 421,115 - BT0349 0.74 +0.1 421,148 - BT0349 0.75 +0.7 421,249 + BT0349 0.79 -1.7 421,253 - BT0349 0.80 -1.1 421,253 - BT0349 0.80 -0.7 421,254 + BT0349 0.80 -0.5 421,255 - BT0349 0.80 -3.5 421,402 + BT0349 0.86 -0.7 421,403 - BT0349 0.86 -0.1 421,421 + BT0349 0.87 -1.7 421,422 - BT0349 0.87 +0.9 421,446 + BT0349 0.88 -1.1 421,446 + BT0349 0.88 -2.1 421,748 - +0.9 421,750 + -3.3 421,750 + -2.1 421,751 - -0.7 421,798 - -2.0 421,907 + -1.9 421,924 + -0.7 421,946 - -2.9 421,973 - -1.7 422,086 + BT0350 0.15 -1.1 422,234 + BT0350 0.24 +0.9 422,345 + BT0350 0.31 -1.7 422,423 - BT0350 0.36 -1.1 422,615 - BT0350 0.48 -1.9 422,651 - BT0350 0.50 -0.1
Or see this region's nucleotide sequence