Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2897

Experiment: Stool_Day6_Mouse13

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stool_Day6_Mouse13
3,620,658	+		BT2896	0.65	+0.6
3,620,676	-		BT2896	0.67	-1.1
3,620,680	+		BT2896	0.67	-1.0
3,620,681	-		BT2896	0.67	-1.4
3,620,693	+		BT2896	0.68	+0.5
3,620,739	-		BT2896	0.71	+0.8
3,620,750	+		BT2896	0.72	-0.2
3,620,764	+		BT2896	0.73	+0.3
3,620,764	+		BT2896	0.73	+1.4
3,620,779	+		BT2896	0.74	-0.8
3,620,780	-		BT2896	0.74	-1.2
3,620,780	-		BT2896	0.74	-1.5
3,620,786	-		BT2896	0.75	-0.2
3,620,809	+		BT2896	0.76	+0.6
3,620,809	+		BT2896	0.76	-0.0
3,620,809	+		BT2896	0.76	-2.4
3,620,810	-		BT2896	0.77	-1.5
3,620,811	+				-1.2
3,620,812	-		BT2896	0.77	+0.8
3,620,814	+		BT2896	0.77	-1.1
3,620,815	-		BT2896	0.77	-0.2
3,620,846	+		BT2896	0.79	-1.3
3,620,868	-		BT2896	0.81	-1.0
3,620,873	+		BT2896	0.81	-0.4
3,620,876	+		BT2896	0.81	-1.2
3,620,876	+		BT2896	0.81	+1.0
3,620,883	-		BT2896	0.82	-0.0
3,620,925	+		BT2896	0.85	+2.8
3,621,019	-				-0.2
3,621,066	-				-0.2
3,621,074	+				+0.0
3,621,156	-				-2.8
3,621,158	-				-0.4
3,621,170	-				-0.8
3,621,188	+				-0.2
3,621,199	-				-0.2
3,621,209	+				+0.2
3,621,210	-				-0.8
3,621,214	-				-1.8
3,621,274	+				-0.0
3,621,279	-				-1.4
3,621,279	-				-2.5
3,621,312	+				-0.2
3,621,363	+				+0.8
3,621,366	+				-0.6
3,621,411	+				-0.2
3,621,416	+				-0.2
3,621,425	+				-0.2
3,621,521	+				-0.2
3,621,524	-				+0.9
3,621,524	-				-2.8
3,621,545	+				-0.1
3,621,546	-				-0.9
3,621,591	-				-1.5
3,621,673	-				-1.8
3,621,692	+				-0.2
3,621,693	-				-1.3
3,621,698	-				+0.8
3,621,699	+				+0.8
3,621,700	-				+0.6
3,621,700	-				-2.0
3,621,761	+				+0.4
3,621,769	+				-1.5
3,621,797	+				-0.9
3,621,894	-				+0.8
3,621,894	-				-0.7
3,621,894	-				-0.2
3,621,960	-				-0.5
3,621,960	-				-2.2
3,621,974	+				+0.6
3,621,975	-				+0.8
3,622,008	-				+0.8
3,622,035	+		BT2897	0.11	+0.8
3,622,206	-		BT2897	0.15	+0.6
3,622,207	+		BT2897	0.15	-0.2
3,622,251	-		BT2897	0.16	+0.5
3,622,260	-		BT2897	0.16	-0.1
3,622,278	-		BT2897	0.17	-0.8
3,622,280	-		BT2897	0.17	+0.8
3,622,280	-		BT2897	0.17	+0.3
3,622,287	+		BT2897	0.17	+0.6
3,622,287	+		BT2897	0.17	-0.8
3,622,289	+		BT2897	0.17	+1.8
3,622,325	-		BT2897	0.18	-0.9
3,622,325	-		BT2897	0.18	+0.8
3,622,328	+		BT2897	0.18	-0.8
3,622,333	+		BT2897	0.18	-0.5
3,622,389	-		BT2897	0.19	+0.7
3,622,390	+		BT2897	0.19	+0.9
3,622,390	+		BT2897	0.19	-2.0
3,622,390	+		BT2897	0.19	-1.2
3,622,403	-		BT2897	0.20	+0.8
3,622,416	+		BT2897	0.20	-0.2
3,622,589	+		BT2897	0.24	+0.2
3,622,590	-		BT2897	0.25	+0.8
3,622,682	-		BT2897	0.27	-0.5
3,622,684	+		BT2897	0.27	-1.2
3,622,713	-		BT2897	0.28	-0.6
3,622,728	+		BT2897	0.28	+0.5
3,622,740	+		BT2897	0.28	-0.0
3,622,740	+		BT2897	0.28	-0.8
3,622,740	+		BT2897	0.28	-0.2
3,622,778	-		BT2897	0.29	-0.8
3,622,834	+		BT2897	0.31	-1.6
3,622,834	+		BT2897	0.31	-0.3
3,622,835	-		BT2897	0.31	+0.8
3,622,927	+		BT2897	0.33	-1.3
3,622,982	+		BT2897	0.34	-2.8
3,623,050	+		BT2897	0.36	-0.8
3,623,055	-		BT2897	0.36	-1.2
3,623,064	-		BT2897	0.36	-0.2
3,623,116	+		BT2897	0.38	+0.1
3,623,127	-		BT2897	0.38	-0.6
3,623,132	-		BT2897	0.38	-0.7
3,623,137	+		BT2897	0.38	-1.7
3,623,138	-		BT2897	0.38	-1.6
3,623,209	+		BT2897	0.40	-2.3
3,623,247	-		BT2897	0.41	+0.2
3,623,249	+		BT2897	0.41	+0.8
3,623,250	-		BT2897	0.41	-0.8
3,623,263	+		BT2897	0.41	-1.5
3,623,263	+		BT2897	0.41	-0.8
3,623,264	-		BT2897	0.41	-3.6
3,623,265	+		BT2897	0.41	+1.8
3,623,266	-		BT2897	0.41	+1.8
3,623,294	+		BT2897	0.42	-3.5
3,623,363	+		BT2897	0.44	+0.9
3,623,364	-		BT2897	0.44	-1.7
3,623,364	-		BT2897	0.44	-1.8
3,623,371	-		BT2897	0.44	-1.0
3,623,371	-		BT2897	0.44	+1.5
3,623,380	-		BT2897	0.44	+0.8
3,623,390	-		BT2897	0.45	-1.5
3,623,398	+		BT2897	0.45	-1.4
3,623,399	-		BT2897	0.45	+0.4
3,623,436	+		BT2897	0.46	-1.3
3,623,451	+		BT2897	0.46	-1.5
3,623,452	-		BT2897	0.46	+0.8
3,623,452	-		BT2897	0.46	+1.3
3,623,453	+		BT2897	0.46	+0.4
3,623,457	-		BT2897	0.46	+3.3
3,623,461	+		BT2897	0.46	-1.4
3,623,462	-		BT2897	0.46	-0.8
3,623,485	+		BT2897	0.47	+0.2
3,623,486	-		BT2897	0.47	+0.8
3,623,496	-		BT2897	0.47	-1.5
3,623,555	-		BT2897	0.49	+1.8
3,623,581	+		BT2897	0.49	-0.2
3,623,611	+		BT2897	0.50	-2.1
3,623,737	-		BT2897	0.53	-1.3
3,623,773	+		BT2897	0.54	-0.2
3,623,775	+		BT2897	0.54	-0.6
3,623,831	-		BT2897	0.56	+1.3
3,623,878	+		BT2897	0.57	-0.5
3,623,893	+		BT2897	0.57	-0.5
3,623,921	-		BT2897	0.58	+0.8
3,623,962	+		BT2897	0.59	-0.2
3,623,996	-		BT2897	0.60	-0.5
3,624,046	+		BT2897	0.61	+2.1
3,624,072	-		BT2897	0.62	+0.2
3,624,084	+		BT2897	0.62	-0.2
3,624,084	+		BT2897	0.62	+0.3
3,624,084	+		BT2897	0.62	-0.2
3,624,087	-		BT2897	0.62	+0.5
3,624,095	+		BT2897	0.62	-0.7
3,624,099	+		BT2897	0.62	-0.8
3,624,143	-				-0.8
3,624,144	+		BT2897	0.64	-0.9
3,624,144	+		BT2897	0.64	-1.7
3,624,144	+		BT2897	0.64	-0.8
3,624,145	-		BT2897	0.64	-1.4
3,624,147	-		BT2897	0.64	+1.4
3,624,149	-		BT2897	0.64	-0.8
3,624,248	-		BT2897	0.66	+0.7
3,624,259	+		BT2897	0.66	-0.1
3,624,268	+		BT2897	0.67	-0.2
3,624,269	-		BT2897	0.67	-0.8
3,624,357	+		BT2897	0.69	+0.1
3,624,358	-		BT2897	0.69	-0.9
3,624,374	+		BT2897	0.69	-1.5
3,624,374	+		BT2897	0.69	-0.0
3,624,388	+		BT2897	0.70	-0.4
3,624,393	+		BT2897	0.70	-1.0
3,624,394	-		BT2897	0.70	+0.8
3,624,394	-		BT2897	0.70	+0.8
3,624,431	-		BT2897	0.71	-0.5
3,624,431	-		BT2897	0.71	+0.8
3,624,458	-		BT2897	0.71	-0.4
3,624,482	-		BT2897	0.72	-0.8
3,624,561	+		BT2897	0.74	-0.8
3,624,565	+		BT2897	0.74	-1.8
3,624,565	+		BT2897	0.74	-1.0
3,624,567	+		BT2897	0.74	+0.5
3,624,646	-		BT2897	0.76	+1.8
3,624,692	+		BT2897	0.77	+0.8
3,624,693	-		BT2897	0.77	-0.2
3,624,721	+		BT2897	0.78	-0.8
3,624,727	+		BT2897	0.78	+0.9
3,624,793	-		BT2897	0.80	+0.2
3,624,829	+		BT2897	0.81	-2.0
3,624,842	-		BT2897	0.81	-0.2
3,624,885	+		BT2897	0.82	-1.4
3,624,886	-		BT2897	0.82	+0.3
3,624,889	+		BT2897	0.82	-2.8
3,624,890	-		BT2897	0.82	-2.4
3,624,895	+		BT2897	0.82	+0.0
3,624,896	-		BT2897	0.82	+0.8
3,624,908	-		BT2897	0.83	+0.5
3,624,920	+		BT2897	0.83	-2.5
3,624,920	+		BT2897	0.83	+0.8
3,624,920	+				+0.4
3,624,920	+		BT2897	0.83	-0.8
3,624,920	+		BT2897	0.83	-1.2
3,624,921	-		BT2897	0.83	+0.2
3,624,923	-		BT2897	0.83	-0.4
3,624,924	+		BT2897	0.83	-0.4
3,624,956	-		BT2897	0.84	+0.4
3,625,031	+		BT2897	0.86	-0.8
3,625,032	-		BT2897	0.86	+1.8
3,625,032	-		BT2897	0.86	+1.2
3,625,114	+		BT2897	0.88	-0.8
3,625,131	+		BT2897	0.88	-1.7
3,625,205	-				+0.8
3,625,274	+				-0.9
3,625,274	+				+1.9
3,625,279	-				+1.8
3,625,286	+				-0.8
3,625,286	+				-0.5
3,625,287	-				-1.5
3,625,287	-				-0.8
3,625,326	+				+0.2
3,625,346	-				+0.7
3,625,432	+				-1.2
3,625,432	+				+0.0
3,625,433	-				+0.8
3,625,444	+				+0.2
3,625,445	-				-0.2
3,625,486	+				-0.2
3,625,492	+				-0.2
3,625,512	+				-0.8
3,625,512	+				+0.8
3,625,539	+				+0.1
3,625,546	+				+0.8
3,625,555	+				+0.8
3,625,556	-				-1.6
3,625,612	-				-1.2
3,625,625	+				-1.8
3,625,626	-				-2.1
3,625,645	+				-2.2
3,625,677	-				-1.5
3,625,711	+				-0.2
3,625,712	-				-0.2
3,625,714	+				-1.2
3,625,715	-				+0.7
3,625,720	-				-2.2
3,625,790	+				-0.8
3,625,797	+				-0.2
3,625,801	+				-2.4
3,625,814	+				-0.1
3,625,877	-				-1.2
3,625,887	-				-1.1
3,625,905	+				-0.8
3,625,905	+				-1.4
3,625,910	+				-0.2
3,625,911	-				-1.3
3,625,916	-				+0.4
3,625,923	+				-1.5
3,625,965	-				-0.2
3,625,968	+				-3.3
3,625,968	+				-0.7
3,625,973	+				-0.5
3,625,989	+				-0.5
3,625,989	+				-0.2
3,626,017	+				-1.2
3,626,022	-				-0.5
3,626,036	-				-1.2
3,626,039	+				-0.2
3,626,059	-				-0.8
3,626,064	-				+0.2
3,626,064	-				-1.2
3,626,064	-				-1.2
3,626,080	+				-1.3
3,626,092	+				-2.0
3,626,105	+				-1.2
3,626,143	+				-0.6
3,626,147	-				-2.7
3,626,171	+				-1.8
3,626,199	+				-1.0
3,626,231	-				-4.0
3,626,235	+				+0.5
3,626,285	+				+1.8
3,626,286	-				-1.2
3,626,295	-				-2.5
3,626,304	-				-2.7
3,626,316	-				-2.4
3,626,316	-				-1.6
3,626,410	-		BT2898	0.18	-1.2
3,626,410	-		BT2898	0.18	-1.5
3,626,455	+		BT2898	0.23	-0.5
3,626,456	-		BT2898	0.23	-1.1
3,626,459	+		BT2898	0.23	-1.2
3,626,460	-		BT2898	0.23	+1.8
3,626,483	+		BT2898	0.26	-1.2
3,626,495	-		BT2898	0.27	-1.8
3,626,500	-		BT2898	0.28	-0.8
3,626,514	-		BT2898	0.29	+0.2
3,626,549	-		BT2898	0.33	-1.0
3,626,553	-		BT2898	0.33	-2.2
3,626,572	+		BT2898	0.35	+0.0