Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1993

Experiment: Stool_Day6_Mouse11

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stool_Day6_Mouse11
2,503,369	-		BT1992	0.69	-0.3
2,503,371	-		BT1992	0.69	-0.6
2,503,394	-		BT1992	0.69	-0.4
2,503,408	+		BT1992	0.70	-0.0
2,503,418	+		BT1992	0.70	+1.0
2,503,431	+		BT1992	0.70	+0.4
2,503,433	+		BT1992	0.71	-0.0
2,503,462	+		BT1992	0.71	+1.0
2,503,462	+		BT1992	0.71	-1.0
2,503,486	-		BT1992	0.72	-0.0
2,503,529	+		BT1992	0.74	-0.0
2,503,640	-		BT1992	0.77	-0.0
2,503,660	-		BT1992	0.78	-1.4
2,503,691	-		BT1992	0.79	+0.0
2,503,698	+		BT1992	0.79	+1.0
2,503,700	+		BT1992	0.79	-0.0
2,503,700	+		BT1992	0.79	-0.6
2,503,795	-		BT1992	0.82	-1.2
2,503,795	-				-1.5
2,503,795	-		BT1992	0.82	-1.6
2,503,983	-		BT1992	0.88	-0.6
2,504,029	-		BT1992	0.90	-0.6
2,504,106	-				+1.0
2,504,203	-				+0.5
2,504,209	-				-1.3
2,504,209	-				-1.2
2,504,218	-				+0.4
2,504,222	-				+1.4
2,504,222	-				-1.4
2,504,222	-				-1.6
2,504,226	-				+0.4
2,504,268	-				+0.8
2,504,325	-				-1.2
2,504,325	-				+1.0
2,504,382	+				+1.0
2,504,382	+				-1.6
2,504,387	+				+2.6
2,504,395	+				-2.0
2,504,446	+				-0.9
2,504,500	-				-0.6
2,504,637	-				-0.6
2,504,648	+				-1.5
2,504,650	+				-1.8
2,504,661	+				-2.6
2,504,661	+				-1.0
2,504,661	+				-1.2
2,504,662	-				+0.0
2,504,662	-				-1.4
2,504,691	-				+0.4
2,504,770	+		BT1993	0.10	+0.1
2,504,770	+		BT1993	0.10	-1.4
2,504,771	-		BT1993	0.10	+0.4
2,504,771	-		BT1993	0.10	-1.3
2,504,807	+		BT1993	0.11	+1.0
2,504,810	-		BT1993	0.11	-2.5
2,504,842	+		BT1993	0.12	-0.4
2,504,845	+		BT1993	0.12	-1.6
2,504,845	+		BT1993	0.12	-1.5
2,504,870	-		BT1993	0.13	+0.4
2,504,920	+		BT1993	0.14	-0.5
2,504,920	+		BT1993	0.14	-0.4
2,504,921	-		BT1993	0.14	-0.1
2,504,962	+		BT1993	0.15	-1.5
2,504,963	-		BT1993	0.15	-0.5
2,504,995	+		BT1993	0.16	-0.6
2,505,087	+		BT1993	0.18	+2.0
2,505,148	-		BT1993	0.20	+1.0
2,505,191	+		BT1993	0.21	-0.5
2,505,213	-		BT1993	0.21	-0.4
2,505,215	-		BT1993	0.21	-0.6
2,505,215	-		BT1993	0.21	+1.0
2,505,217	-		BT1993	0.22	+0.4
2,505,232	-		BT1993	0.22	+1.0
2,505,264	+		BT1993	0.23	+1.7
2,505,274	-		BT1993	0.23	+2.0
2,505,359	+		BT1993	0.25	-0.6
2,505,360	-		BT1993	0.25	-0.0
2,505,360	-		BT1993	0.25	-0.8
2,505,363	+		BT1993	0.25	-0.0
2,505,363	+		BT1993	0.25	+0.0
2,505,410	-		BT1993	0.26	-1.4
2,505,418	+		BT1993	0.27	-0.5
2,505,420	+		BT1993	0.27	-0.0
2,505,421	-		BT1993	0.27	+1.0
2,505,458	+		BT1993	0.28	-0.0
2,505,498	-		BT1993	0.29	-3.2
2,505,711	+		BT1993	0.34	-1.8
2,505,711	+		BT1993	0.34	-0.0
2,505,759	-		BT1993	0.35	+1.5
2,505,817	+		BT1993	0.37	-1.6
2,505,832	-		BT1993	0.37	+1.0
2,505,832	-		BT1993	0.37	+1.0
2,505,843	+		BT1993	0.37	-1.4
2,505,844	-		BT1993	0.37	-0.4
2,505,844	-		BT1993	0.37	-0.8
2,505,849	-		BT1993	0.38	-1.5
2,505,865	+		BT1993	0.38	-0.2
2,505,866	-		BT1993	0.38	-0.3
2,506,005	-		BT1993	0.41	-0.5
2,506,019	+		BT1993	0.42	-1.8
2,506,031	-		BT1993	0.42	-1.5
2,506,080	-		BT1993	0.43	-1.0
2,506,155	+		BT1993	0.45	-1.8
2,506,155	+		BT1993	0.45	+0.5
2,506,250	+		BT1993	0.48	-1.4
2,506,256	+		BT1993	0.48	-1.6
2,506,257	-		BT1993	0.48	-0.2
2,506,329	+		BT1993	0.50	-0.0
2,506,330	-		BT1993	0.50	-3.4
2,506,331	+		BT1993	0.50	-2.3
2,506,332	-		BT1993	0.50	-0.0
2,506,332	-		BT1993	0.50	-0.0
2,506,341	+		BT1993	0.50	-0.0
2,506,341	+		BT1993	0.50	+1.0
2,506,342	-		BT1993	0.50	-1.4
2,506,342	-		BT1993	0.50	-0.4
2,506,344	+		BT1993	0.50	+1.0
2,506,351	-		BT1993	0.50	+1.0
2,506,410	+		BT1993	0.52	-2.8
2,506,411	-		BT1993	0.52	-0.4
2,506,419	+		BT1993	0.52	-0.4
2,506,419	+		BT1993	0.52	+1.0
2,506,455	-		BT1993	0.53	-0.6
2,506,503	+		BT1993	0.54	+1.0
2,506,589	-		BT1993	0.56	+1.0
2,506,616	-		BT1993	0.57	+0.2
2,506,646	+		BT1993	0.58	-1.4
2,506,646	+		BT1993	0.58	+1.0
2,506,651	-		BT1993	0.58	-1.0
2,506,651	-		BT1993	0.58	-0.6
2,506,651	-		BT1993	0.58	-0.6
2,506,653	-		BT1993	0.58	-1.1
2,506,653	-		BT1993	0.58	+1.0
2,506,655	+		BT1993	0.58	-1.9
2,506,656	-		BT1993	0.58	+0.5
2,506,656	-		BT1993	0.58	+1.0
2,506,656	-		BT1993	0.58	+0.1
2,506,748	+		BT1993	0.60	+0.0
2,506,754	+		BT1993	0.60	-0.3
2,506,754	+		BT1993	0.60	-0.0
2,506,755	-		BT1993	0.60	+2.0
2,506,803	+		BT1993	0.62	-2.9
2,506,843	-		BT1993	0.63	+1.0
2,506,843	-		BT1993	0.63	-0.0
2,506,871	+		BT1993	0.63	-2.9
2,506,989	-		BT1993	0.66	+0.4
2,506,992	+		BT1993	0.66	-0.0
2,507,043	+		BT1993	0.68	-1.6
2,507,216	-		BT1993	0.72	-0.0
2,507,216	-		BT1993	0.72	-0.3
2,507,216	-		BT1993	0.72	+1.0
2,507,218	-		BT1993	0.72	+0.4
2,507,252	+		BT1993	0.73	+0.3
2,507,252	+		BT1993	0.73	+0.8
2,507,253	-		BT1993	0.73	-0.0
2,507,253	-		BT1993	0.73	-0.4
2,507,254	+		BT1993	0.73	-3.1
2,507,326	+		BT1993	0.75	+1.0
2,507,327	-		BT1993	0.75	+1.0
2,507,343	+		BT1993	0.75	-0.6
2,507,344	-		BT1993	0.75	-0.5
2,507,354	-		BT1993	0.76	-0.4
2,507,374	-		BT1993	0.76	-0.8
2,507,498	+		BT1993	0.79	+1.6
2,507,498	+		BT1993	0.79	+1.0
2,507,503	-		BT1993	0.79	-0.0
2,507,505	-		BT1993	0.79	+2.0
2,507,545	-		BT1993	0.80	-1.0
2,507,591	+		BT1993	0.82	-0.0
2,507,622	-		BT1993	0.82	-0.6
2,507,634	+		BT1993	0.83	-1.2
2,507,657	+		BT1993	0.83	+1.0
2,507,658	-		BT1993	0.83	-0.6
2,507,658	-		BT1993	0.83	-0.8
2,507,669	-		BT1993	0.84	-0.6
2,507,741	-		BT1993	0.85	-0.0
2,507,748	-		BT1993	0.86	-3.7
2,507,783	-		BT1993	0.86	-0.0
2,507,783	-		BT1993	0.86	+1.6
2,507,818	+		BT1993	0.87	-0.0
2,507,820	+		BT1993	0.87	+0.5
2,507,821	-		BT1993	0.87	-1.3
2,507,869	+		BT1993	0.89	-1.6
2,507,870	-		BT1993	0.89	-0.6
2,507,985	+				+0.0
2,508,068	+				-0.0
2,508,068	+				+0.5
2,508,128	+				+0.7
2,508,154	-				-0.3
2,508,156	-				+2.6
2,508,156	-				-0.4
2,508,191	+				+1.0
2,508,315	+				-0.4
2,508,361	+		BT1994	0.23	+0.4
2,508,374	-		BT1994	0.27	-1.3
2,508,500	+		BT1994	0.67	-1.3
2,508,513	+		BT1994	0.71	-2.2
2,508,525	+		BT1994	0.74	-1.8
2,508,526	-		BT1994	0.75	-0.6
2,508,566	+		BT1994	0.87	-2.1
2,508,594	+				-1.2
2,508,604	+				-3.1
2,508,605	-				-0.6
2,508,617	+				-1.1
2,508,618	-				-0.0
2,508,619	+				-0.0
2,508,785	-		BT1995	0.19	-0.0
2,508,857	+		BT1995	0.31	-1.6
2,508,858	-		BT1995	0.31	+1.0
2,508,893	-		BT1995	0.37	-0.6
2,508,934	+		BT1995	0.44	-0.6
2,508,934	+		BT1995	0.44	-1.2
2,508,948	-		BT1995	0.46	-0.6
2,508,948	-		BT1995	0.46	-1.8
2,509,017	+		BT1995	0.58	-0.6
2,509,021	+		BT1995	0.59	-0.4
2,509,022	-		BT1995	0.59	+0.3
2,509,033	+		BT1995	0.61	-0.7
2,509,080	+		BT1995	0.69	-0.1
2,509,080	+		BT1995	0.69	-1.0
2,509,081	-		BT1995	0.69	-1.0
2,509,085	+		BT1995	0.70	+0.4
2,509,085	+		BT1995	0.70	-0.2
2,509,141	+		BT1995	0.79	-2.5
2,509,176	-		BT1995	0.85	-2.5
2,509,176	-		BT1995	0.85	-1.0
2,509,207	+				-1.6
2,509,236	+				-1.0
2,509,239	+				-0.8
2,509,240	-				-1.5
2,509,282	+				-0.0
2,509,282	+				+0.4
2,509,282	+				-0.7
2,509,286	+				-0.0