Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36345 and BPHYT_RS36350 are separated by 284 nucleotides BPHYT_RS36350 and BPHYT_RS36355 are separated by 246 nucleotides BPHYT_RS36355 and BPHYT_RS36360 are separated by 13 nucleotides
BPHYT_RS36345: BPHYT_RS36345 - hypothetical protein, at 81,934 to 82,860
_RS36345
BPHYT_RS36350: BPHYT_RS36350 - hypothetical protein, at 83,145 to 84,278
_RS36350
BPHYT_RS36355: BPHYT_RS36355 - hypothetical protein, at 84,525 to 84,875
_RS36355
BPHYT_RS36360: BPHYT_RS36360 - hypothetical protein, at 84,889 to 85,194
_RS36360
Position (kb) 83
84
85 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 82.259 kb on - strand, within BPHYT_RS36345 at 82.457 kb on - strand, within BPHYT_RS36345 at 82.457 kb on - strand, within BPHYT_RS36345 at 82.500 kb on + strand, within BPHYT_RS36345 at 82.500 kb on + strand, within BPHYT_RS36345 at 82.500 kb on + strand, within BPHYT_RS36345 at 82.501 kb on - strand, within BPHYT_RS36345 at 82.678 kb on + strand, within BPHYT_RS36345 at 82.678 kb on + strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.681 kb on + strand, within BPHYT_RS36345 at 82.681 kb on + strand, within BPHYT_RS36345 at 82.850 kb on + strand at 82.851 kb on - strand at 82.888 kb on + strand at 82.888 kb on + strand at 82.940 kb on - strand at 82.963 kb on + strand at 82.963 kb on + strand at 83.054 kb on - strand at 83.174 kb on + strand at 83.394 kb on + strand, within BPHYT_RS36350 at 83.884 kb on + strand, within BPHYT_RS36350 at 83.885 kb on - strand, within BPHYT_RS36350 at 83.914 kb on - strand, within BPHYT_RS36350 at 84.004 kb on - strand, within BPHYT_RS36350 at 84.423 kb on - strand at 84.801 kb on + strand, within BPHYT_RS36355 at 84.803 kb on - strand, within BPHYT_RS36355 at 84.980 kb on - strand, within BPHYT_RS36360 at 84.997 kb on + strand, within BPHYT_RS36360 at 85.099 kb on + strand, within BPHYT_RS36360
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 82,259 - BPHYT_RS36345 0.35 +0.3 82,457 - BPHYT_RS36345 0.56 -0.5 82,457 - BPHYT_RS36345 0.56 +0.3 82,500 + BPHYT_RS36345 0.61 -1.3 82,500 + BPHYT_RS36345 0.61 -0.4 82,500 + BPHYT_RS36345 0.61 -0.4 82,501 - BPHYT_RS36345 0.61 -0.1 82,678 + BPHYT_RS36345 0.80 +0.8 82,678 + BPHYT_RS36345 0.80 +0.0 82,679 - BPHYT_RS36345 0.80 +0.5 82,679 - BPHYT_RS36345 0.80 -0.4 82,679 - BPHYT_RS36345 0.80 +0.2 82,679 - BPHYT_RS36345 0.80 -0.2 82,681 + BPHYT_RS36345 0.81 +0.9 82,681 + BPHYT_RS36345 0.81 -0.5 82,850 + +0.1 82,851 - -0.5 82,888 + +0.4 82,888 + -1.3 82,940 - +0.9 82,963 + +0.3 82,963 + -0.3 83,054 - -3.9 83,174 + +0.3 83,394 + BPHYT_RS36350 0.22 -0.6 83,884 + BPHYT_RS36350 0.65 +1.6 83,885 - BPHYT_RS36350 0.65 -1.0 83,914 - BPHYT_RS36350 0.68 -0.1 84,004 - BPHYT_RS36350 0.76 +0.0 84,423 - +0.5 84,801 + BPHYT_RS36355 0.79 +0.8 84,803 - BPHYT_RS36355 0.79 +0.6 84,980 - BPHYT_RS36360 0.30 -2.9 84,997 + BPHYT_RS36360 0.35 +0.7 85,099 + BPHYT_RS36360 0.69 -0.2
Or see this region's nucleotide sequence