Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36335 and BPHYT_RS36340 are separated by 629 nucleotides BPHYT_RS36340 and BPHYT_RS36345 are separated by 164 nucleotides
BPHYT_RS36335: BPHYT_RS36335 - hypothetical protein, at 79,725 to 80,474
_RS36335
BPHYT_RS36340: BPHYT_RS36340 - hypothetical protein, at 81,104 to 81,769
_RS36340
BPHYT_RS36345: BPHYT_RS36345 - hypothetical protein, at 81,934 to 82,860
_RS36345
Position (kb) 81
82 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 80.149 kb on - strand, within BPHYT_RS36335 at 80.155 kb on - strand, within BPHYT_RS36335 at 80.155 kb on - strand, within BPHYT_RS36335 at 80.248 kb on + strand, within BPHYT_RS36335 at 80.248 kb on + strand, within BPHYT_RS36335 at 80.248 kb on + strand, within BPHYT_RS36335 at 80.249 kb on - strand, within BPHYT_RS36335 at 80.249 kb on - strand, within BPHYT_RS36335 at 80.249 kb on - strand, within BPHYT_RS36335 at 80.251 kb on - strand, within BPHYT_RS36335 at 80.573 kb on + strand at 80.879 kb on - strand at 80.995 kb on + strand at 80.996 kb on - strand at 80.996 kb on - strand at 80.996 kb on - strand at 80.996 kb on - strand at 80.996 kb on - strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.150 kb on - strand at 81.312 kb on + strand, within BPHYT_RS36340 at 81.482 kb on + strand, within BPHYT_RS36340 at 81.601 kb on + strand, within BPHYT_RS36340 at 81.726 kb on - strand at 81.726 kb on - strand at 81.990 kb on - strand at 81.990 kb on - strand at 82.259 kb on - strand, within BPHYT_RS36345 at 82.457 kb on - strand, within BPHYT_RS36345 at 82.457 kb on - strand, within BPHYT_RS36345 at 82.500 kb on + strand, within BPHYT_RS36345 at 82.500 kb on + strand, within BPHYT_RS36345 at 82.500 kb on + strand, within BPHYT_RS36345 at 82.501 kb on - strand, within BPHYT_RS36345 at 82.678 kb on + strand, within BPHYT_RS36345 at 82.678 kb on + strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.681 kb on + strand, within BPHYT_RS36345 at 82.681 kb on + strand, within BPHYT_RS36345
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 80,149 - BPHYT_RS36335 0.57 +0.4 80,155 - BPHYT_RS36335 0.57 -0.6 80,155 - BPHYT_RS36335 0.57 -2.3 80,248 + BPHYT_RS36335 0.70 +0.3 80,248 + BPHYT_RS36335 0.70 -0.8 80,248 + BPHYT_RS36335 0.70 -0.4 80,249 - BPHYT_RS36335 0.70 +0.4 80,249 - BPHYT_RS36335 0.70 -1.0 80,249 - BPHYT_RS36335 0.70 +0.2 80,251 - BPHYT_RS36335 0.70 +0.8 80,573 + +0.5 80,879 - +0.2 80,995 + -1.3 80,996 - -1.7 80,996 - +0.7 80,996 - -0.1 80,996 - +1.3 80,996 - -0.8 81,149 + +3.1 81,149 + +0.4 81,149 + +1.2 81,149 + -0.4 81,149 + -0.3 81,150 - +0.7 81,312 + BPHYT_RS36340 0.31 +3.9 81,482 + BPHYT_RS36340 0.57 +1.3 81,601 + BPHYT_RS36340 0.75 +0.3 81,726 - +0.6 81,726 - -0.1 81,990 - -0.3 81,990 - -1.0 82,259 - BPHYT_RS36345 0.35 +0.3 82,457 - BPHYT_RS36345 0.56 -0.5 82,457 - BPHYT_RS36345 0.56 +0.3 82,500 + BPHYT_RS36345 0.61 -1.3 82,500 + BPHYT_RS36345 0.61 -0.4 82,500 + BPHYT_RS36345 0.61 -0.4 82,501 - BPHYT_RS36345 0.61 -0.1 82,678 + BPHYT_RS36345 0.80 +0.8 82,678 + BPHYT_RS36345 0.80 +0.0 82,679 - BPHYT_RS36345 0.80 +0.5 82,679 - BPHYT_RS36345 0.80 -0.4 82,679 - BPHYT_RS36345 0.80 +0.2 82,679 - BPHYT_RS36345 0.80 -0.2 82,681 + BPHYT_RS36345 0.81 +0.9 82,681 + BPHYT_RS36345 0.81 -0.5
Or see this region's nucleotide sequence