Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36280

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36270 and BPHYT_RS36275 are separated by 386 nucleotidesBPHYT_RS36275 and BPHYT_RS36280 are separated by 1 nucleotides BPHYT_RS36270: BPHYT_RS36270 - hypothetical protein, at 63,847 to 64,425 _RS36270 BPHYT_RS36275: BPHYT_RS36275 - hypothetical protein, at 64,812 to 65,195 _RS36275 BPHYT_RS36280: BPHYT_RS36280 - type IV secretion system protein VirD4, at 65,197 to 66,885 _RS36280 Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 64.588 kb on + strandat 64.823 kb on - strandat 64.931 kb on - strand, within BPHYT_RS36275at 65.107 kb on - strand, within BPHYT_RS36275at 65.107 kb on - strand, within BPHYT_RS36275at 65.196 kb on + strandat 65.224 kb on + strandat 65.224 kb on + strandat 65.224 kb on + strandat 65.224 kb on + strandat 65.224 kb on + strandat 65.225 kb on - strandat 65.294 kb on + strandat 65.366 kb on + strand, within BPHYT_RS36280at 65.367 kb on - strand, within BPHYT_RS36280at 65.419 kb on - strand, within BPHYT_RS36280at 65.458 kb on + strandat 65.532 kb on + strand, within BPHYT_RS36280at 65.532 kb on + strand, within BPHYT_RS36280at 65.532 kb on + strand, within BPHYT_RS36280at 65.641 kb on - strand, within BPHYT_RS36280at 65.802 kb on - strand, within BPHYT_RS36280at 65.891 kb on + strand, within BPHYT_RS36280at 65.972 kb on + strandat 66.006 kb on + strand, within BPHYT_RS36280at 66.036 kb on + strand, within BPHYT_RS36280at 66.061 kb on + strand, within BPHYT_RS36280at 66.061 kb on + strand, within BPHYT_RS36280at 66.062 kb on - strand, within BPHYT_RS36280at 66.062 kb on - strand, within BPHYT_RS36280at 66.062 kb on - strand, within BPHYT_RS36280at 66.063 kb on + strand, within BPHYT_RS36280at 66.079 kb on + strand, within BPHYT_RS36280at 66.080 kb on - strand, within BPHYT_RS36280at 66.110 kb on - strand, within BPHYT_RS36280at 66.259 kb on - strand, within BPHYT_RS36280at 66.259 kb on - strand, within BPHYT_RS36280at 66.323 kb on - strand, within BPHYT_RS36280at 66.323 kb on - strand, within BPHYT_RS36280at 66.323 kb on - strand, within BPHYT_RS36280at 66.323 kb on - strand, within BPHYT_RS36280at 66.323 kb on - strand, within BPHYT_RS36280at 66.366 kb on + strand, within BPHYT_RS36280at 66.367 kb on - strand, within BPHYT_RS36280at 66.469 kb on - strand, within BPHYT_RS36280at 66.484 kb on - strand, within BPHYT_RS36280at 66.484 kb on - strand, within BPHYT_RS36280at 66.484 kb on - strand, within BPHYT_RS36280at 66.484 kb on - strand, within BPHYT_RS36280at 66.484 kb on - strand, within BPHYT_RS36280at 66.487 kb on + strand, within BPHYT_RS36280at 66.487 kb on + strand, within BPHYT_RS36280at 66.488 kb on - strand, within BPHYT_RS36280at 66.488 kb on - strandat 66.488 kb on - strand, within BPHYT_RS36280at 66.530 kb on + strand, within BPHYT_RS36280at 66.530 kb on + strand, within BPHYT_RS36280at 66.531 kb on - strand, within BPHYT_RS36280at 66.588 kb on - strand, within BPHYT_RS36280at 66.588 kb on - strand, within BPHYT_RS36280at 66.695 kb on - strand, within BPHYT_RS36280at 66.695 kb on - strand, within BPHYT_RS36280at 66.829 kb on - strandat 66.829 kb on - strandat 66.887 kb on - strandat 66.939 kb on + strandat 66.940 kb on - strandat 66.940 kb on - strandat 66.958 kb on - strandat 66.958 kb on - strandat 66.961 kb on - strandat 67.091 kb on + strandat 67.479 kb on + strandat 67.842 kb on + strandat 67.842 kb on + strandat 67.842 kb on + strandat 67.842 kb on + strandat 67.842 kb on + strandat 67.842 kb on + strandat 67.842 kb on + strandat 67.842 kb on + strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.845 kb on - strandat 67.862 kb on + strandat 67.862 kb on + strandat 67.863 kb on - strandat 67.868 kb on + strandat 67.869 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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64,588 + -0.7
64,823 - -1.7
64,931 - BPHYT_RS36275 0.31 -2.3
65,107 - BPHYT_RS36275 0.77 -1.7
65,107 - BPHYT_RS36275 0.77 -0.3
65,196 + -1.3
65,224 + +0.8
65,224 + -0.3
65,224 + -0.7
65,224 + +0.7
65,224 + -1.6
65,225 - -0.7
65,294 + -1.7
65,366 + BPHYT_RS36280 0.10 -0.7
65,367 - BPHYT_RS36280 0.10 -0.5
65,419 - BPHYT_RS36280 0.13 -0.7
65,458 + +0.3
65,532 + BPHYT_RS36280 0.20 +0.1
65,532 + BPHYT_RS36280 0.20 -0.2
65,532 + BPHYT_RS36280 0.20 +0.3
65,641 - BPHYT_RS36280 0.26 -0.1
65,802 - BPHYT_RS36280 0.36 +0.1
65,891 + BPHYT_RS36280 0.41 -0.7
65,972 + -1.7
66,006 + BPHYT_RS36280 0.48 -2.1
66,036 + BPHYT_RS36280 0.50 +0.9
66,061 + BPHYT_RS36280 0.51 -1.2
66,061 + BPHYT_RS36280 0.51 -1.6
66,062 - BPHYT_RS36280 0.51 -0.1
66,062 - BPHYT_RS36280 0.51 +0.5
66,062 - BPHYT_RS36280 0.51 -0.2
66,063 + BPHYT_RS36280 0.51 -0.3
66,079 + BPHYT_RS36280 0.52 +0.5
66,080 - BPHYT_RS36280 0.52 -2.3
66,110 - BPHYT_RS36280 0.54 +0.3
66,259 - BPHYT_RS36280 0.63 +1.7
66,259 - BPHYT_RS36280 0.63 -0.4
66,323 - BPHYT_RS36280 0.67 -0.4
66,323 - BPHYT_RS36280 0.67 +0.9
66,323 - BPHYT_RS36280 0.67 -0.7
66,323 - BPHYT_RS36280 0.67 +0.3
66,323 - BPHYT_RS36280 0.67 +0.0
66,366 + BPHYT_RS36280 0.69 -2.3
66,367 - BPHYT_RS36280 0.69 +0.2
66,469 - BPHYT_RS36280 0.75 +0.5
66,484 - BPHYT_RS36280 0.76 +1.6
66,484 - BPHYT_RS36280 0.76 -0.7
66,484 - BPHYT_RS36280 0.76 +0.6
66,484 - BPHYT_RS36280 0.76 -1.3
66,484 - BPHYT_RS36280 0.76 -1.2
66,487 + BPHYT_RS36280 0.76 -1.1
66,487 + BPHYT_RS36280 0.76 -2.3
66,488 - BPHYT_RS36280 0.76 -0.3
66,488 - +0.3
66,488 - BPHYT_RS36280 0.76 -0.3
66,530 + BPHYT_RS36280 0.79 -0.7
66,530 + BPHYT_RS36280 0.79 -2.7
66,531 - BPHYT_RS36280 0.79 -1.3
66,588 - BPHYT_RS36280 0.82 -0.4
66,588 - BPHYT_RS36280 0.82 -1.2
66,695 - BPHYT_RS36280 0.89 -0.4
66,695 - BPHYT_RS36280 0.89 +0.2
66,829 - -0.4
66,829 - -0.2
66,887 - +0.7
66,939 + +0.3
66,940 - +0.1
66,940 - -1.5
66,958 - -2.0
66,958 - -0.5
66,961 - -0.4
67,091 + -2.6
67,479 + -0.2
67,842 + +1.8
67,842 + -1.0
67,842 + -0.2
67,842 + -0.2
67,842 + +1.8
67,842 + +1.1
67,842 + +0.4
67,842 + +0.8
67,843 - -3.3
67,843 - +1.3
67,843 - +0.8
67,843 - -0.6
67,843 - +0.5
67,843 - +0.1
67,843 - -0.0
67,843 - +0.5
67,843 - -0.7
67,845 - +1.8
67,862 + -0.7
67,862 + -1.6
67,863 - +0.2
67,868 + -0.1
67,869 - -0.9

Or see this region's nucleotide sequence