Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36035 and BPHYT_RS36040 are separated by 24 nucleotides BPHYT_RS36040 and BPHYT_RS36045 overlap by 4 nucleotides BPHYT_RS36045 and BPHYT_RS36050 are separated by 20 nucleotides BPHYT_RS36050 and BPHYT_RS36055 are separated by 8 nucleotides BPHYT_RS36055 and BPHYT_RS36060 are separated by 9 nucleotides BPHYT_RS36060 and BPHYT_RS36065 are separated by 7 nucleotides BPHYT_RS36065 and BPHYT_RS36070 overlap by 1 nucleotides
BPHYT_RS36035: BPHYT_RS36035 - hypothetical protein, at 35,605 to 36,003
_RS36035
BPHYT_RS36040: BPHYT_RS36040 - hypothetical protein, at 36,028 to 36,657
_RS36040
BPHYT_RS36045: BPHYT_RS36045 - hypothetical protein, at 36,654 to 36,911
_RS36045
BPHYT_RS36050: BPHYT_RS36050 - hypothetical protein, at 36,932 to 37,393
_RS36050
BPHYT_RS36055: BPHYT_RS36055 - hypothetical protein, at 37,402 to 37,695
_RS36055
BPHYT_RS36060: BPHYT_RS36060 - hypothetical protein, at 37,705 to 38,094
_RS36060
BPHYT_RS36065: BPHYT_RS36065 - hypothetical protein, at 38,102 to 38,296
_RS36065
BPHYT_RS36070: BPHYT_RS36070 - hypothetical protein, at 38,296 to 38,571
_RS36070
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 36.250 kb on + strand, within BPHYT_RS36040 at 36.250 kb on + strand, within BPHYT_RS36040 at 36.250 kb on + strand, within BPHYT_RS36040 at 36.250 kb on + strand, within BPHYT_RS36040 at 37.058 kb on - strand, within BPHYT_RS36050 at 37.095 kb on + strand, within BPHYT_RS36050 at 37.096 kb on - strand, within BPHYT_RS36050 at 37.190 kb on - strand, within BPHYT_RS36050 at 37.291 kb on + strand, within BPHYT_RS36050 at 37.393 kb on + strand at 37.393 kb on + strand at 37.394 kb on - strand at 37.437 kb on + strand, within BPHYT_RS36055 at 37.695 kb on + strand at 37.865 kb on + strand, within BPHYT_RS36060 at 38.051 kb on + strand, within BPHYT_RS36060 at 38.098 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 36,250 + BPHYT_RS36040 0.35 +1.9 36,250 + BPHYT_RS36040 0.35 +1.0 36,250 + BPHYT_RS36040 0.35 -0.2 36,250 + BPHYT_RS36040 0.35 +0.5 37,058 - BPHYT_RS36050 0.27 +0.0 37,095 + BPHYT_RS36050 0.35 -1.7 37,096 - BPHYT_RS36050 0.35 -2.3 37,190 - BPHYT_RS36050 0.56 -0.1 37,291 + BPHYT_RS36050 0.78 -0.7 37,393 + +2.1 37,393 + -1.0 37,394 - -0.2 37,437 + BPHYT_RS36055 0.12 -2.0 37,695 + -1.3 37,865 + BPHYT_RS36060 0.41 -3.4 38,051 + BPHYT_RS36060 0.89 -1.5 38,098 - -0.7
Or see this region's nucleotide sequence