Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35870

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
7,712	+				-0.4
7,757	+				-0.7
7,757	+				-0.7
7,777	-				+0.3
7,944	+				-0.6
7,944	+				+0.6
7,945	-				+3.7
7,983	-				+1.1
8,036	+				+0.0
8,088	-				+0.6
8,129	+				-0.3
8,129	+				-0.3
8,130	-				+0.8
8,143	-				+0.6
8,247	+		BPHYT_RS35865	0.40	-0.3
8,247	+		BPHYT_RS35865	0.40	+1.4
8,247	+		BPHYT_RS35865	0.40	+0.7
8,248	-		BPHYT_RS35865	0.40	-0.1
8,396	+		BPHYT_RS35865	0.90	+4.0
8,397	-				+0.1
8,498	-				-1.0
8,535	-				+1.1
8,543	+				-0.4
8,616	+				+0.1
8,616	+				+6.7
8,616	+				-2.5
8,618	+				+7.5
8,618	+				+0.7
8,619	-				-2.3
8,619	-				+0.9
8,619	-				+0.3
8,619	-				-0.2
8,619	-				+0.6
8,619	-				+6.2
8,619	-				-0.8
8,622	+				+1.3
8,623	-				+5.3
8,895	+		BPHYT_RS35870	0.31	-0.3
8,896	-		BPHYT_RS35870	0.31	+3.6
8,935	-		BPHYT_RS35870	0.34	-0.1
8,994	+		BPHYT_RS35870	0.39	+1.3
8,994	+		BPHYT_RS35870	0.39	-0.5
8,994	+		BPHYT_RS35870	0.39	+0.4
8,995	-		BPHYT_RS35870	0.39	+1.1
8,995	-		BPHYT_RS35870	0.39	-0.3
9,102	+		BPHYT_RS35870	0.47	+0.2
9,102	+		BPHYT_RS35870	0.47	-0.1
9,105	+		BPHYT_RS35870	0.47	-1.4
9,106	-		BPHYT_RS35870	0.47	-0.1
9,168	-		BPHYT_RS35870	0.52	+0.6
9,330	+		BPHYT_RS35870	0.65	-0.8
9,330	+		BPHYT_RS35870	0.65	-0.6
9,331	-		BPHYT_RS35870	0.65	-1.1
9,365	+		BPHYT_RS35870	0.68	+0.3
9,365	+		BPHYT_RS35870	0.68	-1.7
9,396	+		BPHYT_RS35870	0.70	+0.8
9,396	+		BPHYT_RS35870	0.70	-0.7
9,397	-		BPHYT_RS35870	0.70	+3.5
9,431	+		BPHYT_RS35870	0.73	+0.4
9,431	+		BPHYT_RS35870	0.73	-2.3
9,431	+		BPHYT_RS35870	0.73	+1.6
9,432	-		BPHYT_RS35870	0.73	+0.6
9,432	-		BPHYT_RS35870	0.73	-1.7
9,485	+		BPHYT_RS35870	0.77	-0.2
9,485	+		BPHYT_RS35870	0.77	-3.3
9,486	-		BPHYT_RS35870	0.77	+0.5
9,523	+		BPHYT_RS35870	0.80	-2.7
9,524	-		BPHYT_RS35870	0.80	+0.3
9,572	+		BPHYT_RS35870	0.84	+0.2
9,630	+		BPHYT_RS35870	0.88	+2.3
9,631	-		BPHYT_RS35870	0.88	+0.7
9,660	+				+0.0
9,661	-				-0.4
9,686	+				-0.4
9,686	+				-0.1
9,721	-				-2.0
9,723	+				-0.0
9,724	-				-0.5
9,840	+				-0.3
9,841	-				-0.1
9,841	-				-1.7
9,841	-				-1.1
9,841	-				-0.0
9,868	-				-1.3
9,868	-				-0.6
9,960	+				-0.3
9,961	-				-0.7
9,966	+				-1.0
9,985	-				+1.7
10,011	+				-1.3
10,011	+				-0.0
10,035	+				-1.5
10,036	-				+1.1
10,036	-				-0.5
10,175	+				+0.7
10,175	+				-0.9
10,260	-				+0.6
10,324	-				+0.1
10,353	-				+0.5
10,378	-				-1.0
10,470	+				-0.1
10,470	+				-0.3
10,471	-				-0.1
10,531	+				+0.6
10,640	+		BPHYT_RS35875	0.23	+0.3
10,670	+		BPHYT_RS35875	0.29	-1.2
10,671	-		BPHYT_RS35875	0.29	+0.8
10,683	+		BPHYT_RS35875	0.32	+1.3
10,772	+		BPHYT_RS35875	0.51	+0.3
10,772	+		BPHYT_RS35875	0.51	-0.4