Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35845 and BPHYT_RS35850 are separated by 8 nucleotides BPHYT_RS35850 and BPHYT_RS35855 are separated by 6 nucleotides BPHYT_RS35855 and BPHYT_RS35860 are separated by 23 nucleotides
BPHYT_RS35845: BPHYT_RS35845 - hypothetical protein, at 2,404 to 3,792
_RS35845
BPHYT_RS35850: BPHYT_RS35850 - hypothetical protein, at 3,801 to 4,601
_RS35850
BPHYT_RS35855: BPHYT_RS35855 - type II secretion system protein E, at 4,608 to 6,626
_RS35855
BPHYT_RS35860: BPHYT_RS35860 - type II secretory pathway component PulF-like protein, at 6,650 to 7,768
_RS35860
Position (kb) 4
5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 3.799 kb on + strand at 3.995 kb on + strand, within BPHYT_RS35850 at 4.077 kb on - strand at 4.308 kb on + strand, within BPHYT_RS35850 at 4.308 kb on + strand, within BPHYT_RS35850 at 4.318 kb on - strand, within BPHYT_RS35850 at 4.519 kb on + strand, within BPHYT_RS35850 at 4.519 kb on + strand, within BPHYT_RS35850 at 4.520 kb on - strand, within BPHYT_RS35850 at 4.599 kb on + strand at 4.599 kb on + strand at 4.599 kb on + strand at 4.690 kb on + strand at 5.222 kb on + strand, within BPHYT_RS35855 at 5.223 kb on - strand, within BPHYT_RS35855 at 5.261 kb on - strand, within BPHYT_RS35855 at 5.293 kb on - strand, within BPHYT_RS35855 at 5.375 kb on + strand, within BPHYT_RS35855 at 5.376 kb on - strand, within BPHYT_RS35855 at 5.378 kb on - strand, within BPHYT_RS35855 at 5.390 kb on + strand, within BPHYT_RS35855 at 5.390 kb on + strand, within BPHYT_RS35855 at 5.391 kb on - strand, within BPHYT_RS35855 at 5.614 kb on - strand, within BPHYT_RS35855 at 5.624 kb on + strand, within BPHYT_RS35855 at 5.920 kb on + strand, within BPHYT_RS35855 at 5.952 kb on - strand, within BPHYT_RS35855 at 5.952 kb on - strand, within BPHYT_RS35855 at 6.298 kb on - strand, within BPHYT_RS35855 at 6.386 kb on + strand, within BPHYT_RS35855 at 6.489 kb on + strand at 6.580 kb on + strand at 6.581 kb on - strand at 6.649 kb on + strand at 6.649 kb on + strand at 6.650 kb on - strand at 6.650 kb on - strand at 6.675 kb on + strand at 6.675 kb on + strand at 6.676 kb on - strand at 6.741 kb on - strand at 6.741 kb on - strand at 6.931 kb on + strand, within BPHYT_RS35860 at 6.932 kb on - strand, within BPHYT_RS35860 at 7.149 kb on + strand, within BPHYT_RS35860 at 7.149 kb on + strand, within BPHYT_RS35860 at 7.149 kb on + strand, within BPHYT_RS35860 at 7.150 kb on - strand, within BPHYT_RS35860 at 7.150 kb on - strand, within BPHYT_RS35860 at 7.185 kb on - strand, within BPHYT_RS35860 at 7.185 kb on - strand, within BPHYT_RS35860 at 7.185 kb on - strand, within BPHYT_RS35860 at 7.265 kb on + strand, within BPHYT_RS35860
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 3,799 + -1.7 3,995 + BPHYT_RS35850 0.24 +1.3 4,077 - +0.3 4,308 + BPHYT_RS35850 0.63 -1.2 4,308 + BPHYT_RS35850 0.63 -1.5 4,318 - BPHYT_RS35850 0.65 +0.4 4,519 + BPHYT_RS35850 0.90 -0.7 4,519 + BPHYT_RS35850 0.90 -0.7 4,520 - BPHYT_RS35850 0.90 +0.5 4,599 + -1.6 4,599 + +4.3 4,599 + +0.8 4,690 + +0.9 5,222 + BPHYT_RS35855 0.30 -2.5 5,223 - BPHYT_RS35855 0.30 -1.2 5,261 - BPHYT_RS35855 0.32 -0.7 5,293 - BPHYT_RS35855 0.34 +1.1 5,375 + BPHYT_RS35855 0.38 +0.9 5,376 - BPHYT_RS35855 0.38 -0.6 5,378 - BPHYT_RS35855 0.38 +0.0 5,390 + BPHYT_RS35855 0.39 +1.3 5,390 + BPHYT_RS35855 0.39 -0.5 5,391 - BPHYT_RS35855 0.39 -0.9 5,614 - BPHYT_RS35855 0.50 -0.1 5,624 + BPHYT_RS35855 0.50 -2.3 5,920 + BPHYT_RS35855 0.65 +0.3 5,952 - BPHYT_RS35855 0.67 +1.4 5,952 - BPHYT_RS35855 0.67 -0.6 6,298 - BPHYT_RS35855 0.84 +4.5 6,386 + BPHYT_RS35855 0.88 -2.3 6,489 + -1.2 6,580 + -2.5 6,581 - -0.2 6,649 + +0.9 6,649 + +0.6 6,650 - +1.0 6,650 - +0.8 6,675 + +0.4 6,675 + -0.2 6,676 - +2.8 6,741 - +0.3 6,741 - +2.6 6,931 + BPHYT_RS35860 0.25 +4.3 6,932 - BPHYT_RS35860 0.25 +0.8 7,149 + BPHYT_RS35860 0.45 +1.4 7,149 + BPHYT_RS35860 0.45 +0.4 7,149 + BPHYT_RS35860 0.45 -0.0 7,150 - BPHYT_RS35860 0.45 -0.0 7,150 - BPHYT_RS35860 0.45 +0.0 7,185 - BPHYT_RS35860 0.48 -1.2 7,185 - BPHYT_RS35860 0.48 +0.7 7,185 - BPHYT_RS35860 0.48 +0.9 7,265 + BPHYT_RS35860 0.55 -1.1
Or see this region's nucleotide sequence