Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35840

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35835 and BPHYT_RS35840 are separated by 94 nucleotidesBPHYT_RS35840 and BPHYT_RS35845 are separated by 2 nucleotides BPHYT_RS35835: BPHYT_RS35835 - hypothetical protein, at 16 to 510 _RS35835 BPHYT_RS35840: BPHYT_RS35840 - hypothetical protein, at 605 to 2,401 _RS35840 BPHYT_RS35845: BPHYT_RS35845 - hypothetical protein, at 2,404 to 3,792 _RS35845 Position (kb) 0 1 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 0.152 kb on - strand, within BPHYT_RS35835at 0.152 kb on - strand, within BPHYT_RS35835at 0.443 kb on + strandat 0.587 kb on - strandat 0.744 kb on + strandat 0.832 kb on - strand, within BPHYT_RS35840at 0.953 kb on - strand, within BPHYT_RS35840at 1.030 kb on + strand, within BPHYT_RS35840at 1.161 kb on - strand, within BPHYT_RS35840at 1.161 kb on - strand, within BPHYT_RS35840at 1.162 kb on + strand, within BPHYT_RS35840at 1.183 kb on + strand, within BPHYT_RS35840at 1.275 kb on - strand, within BPHYT_RS35840at 1.301 kb on - strand, within BPHYT_RS35840at 1.304 kb on + strand, within BPHYT_RS35840at 1.351 kb on + strand, within BPHYT_RS35840at 1.359 kb on - strand, within BPHYT_RS35840at 1.543 kb on + strand, within BPHYT_RS35840at 1.631 kb on + strand, within BPHYT_RS35840at 1.713 kb on + strand, within BPHYT_RS35840at 1.923 kb on + strand, within BPHYT_RS35840at 1.924 kb on - strand, within BPHYT_RS35840at 1.938 kb on - strand, within BPHYT_RS35840at 2.177 kb on + strand, within BPHYT_RS35840at 2.179 kb on - strand, within BPHYT_RS35840at 2.326 kb on + strandat 2.777 kb on - strand, within BPHYT_RS35845at 2.823 kb on - strand, within BPHYT_RS35845at 2.920 kb on - strand, within BPHYT_RS35845at 2.950 kb on + strand, within BPHYT_RS35845at 2.951 kb on - strand, within BPHYT_RS35845at 2.951 kb on - strand, within BPHYT_RS35845at 3.055 kb on + strand, within BPHYT_RS35845at 3.056 kb on - strand, within BPHYT_RS35845at 3.090 kb on + strand, within BPHYT_RS35845at 3.110 kb on - strand, within BPHYT_RS35845at 3.121 kb on + strand, within BPHYT_RS35845at 3.122 kb on - strand, within BPHYT_RS35845at 3.210 kb on + strand, within BPHYT_RS35845at 3.210 kb on + strand, within BPHYT_RS35845at 3.211 kb on - strand, within BPHYT_RS35845at 3.260 kb on - strand, within BPHYT_RS35845at 3.358 kb on - strand, within BPHYT_RS35845at 3.358 kb on - strand, within BPHYT_RS35845at 3.358 kb on - strand, within BPHYT_RS35845at 3.358 kb on - strandat 3.361 kb on + strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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152 - BPHYT_RS35835 0.27 +0.3
152 - BPHYT_RS35835 0.27 -0.1
443 + -0.7
587 - -0.7
744 + -1.3
832 - BPHYT_RS35840 0.13 +0.4
953 - BPHYT_RS35840 0.19 +4.9
1,030 + BPHYT_RS35840 0.24 -0.1
1,161 - BPHYT_RS35840 0.31 +0.7
1,161 - BPHYT_RS35840 0.31 +1.1
1,162 + BPHYT_RS35840 0.31 +0.1
1,183 + BPHYT_RS35840 0.32 +0.1
1,275 - BPHYT_RS35840 0.37 +2.7
1,301 - BPHYT_RS35840 0.39 +0.5
1,304 + BPHYT_RS35840 0.39 -2.3
1,351 + BPHYT_RS35840 0.42 -0.7
1,359 - BPHYT_RS35840 0.42 +2.3
1,543 + BPHYT_RS35840 0.52 -2.9
1,631 + BPHYT_RS35840 0.57 +0.1
1,713 + BPHYT_RS35840 0.62 +0.3
1,923 + BPHYT_RS35840 0.73 +0.5
1,924 - BPHYT_RS35840 0.73 -0.1
1,938 - BPHYT_RS35840 0.74 +1.8
2,177 + BPHYT_RS35840 0.87 +1.4
2,179 - BPHYT_RS35840 0.88 +0.5
2,326 + -1.3
2,777 - BPHYT_RS35845 0.27 +0.2
2,823 - BPHYT_RS35845 0.30 -0.6
2,920 - BPHYT_RS35845 0.37 -1.2
2,950 + BPHYT_RS35845 0.39 -1.4
2,951 - BPHYT_RS35845 0.39 +1.3
2,951 - BPHYT_RS35845 0.39 -0.5
3,055 + BPHYT_RS35845 0.47 -1.5
3,056 - BPHYT_RS35845 0.47 +3.3
3,090 + BPHYT_RS35845 0.49 +0.8
3,110 - BPHYT_RS35845 0.51 +0.3
3,121 + BPHYT_RS35845 0.52 -1.7
3,122 - BPHYT_RS35845 0.52 +8.2
3,210 + BPHYT_RS35845 0.58 -1.2
3,210 + BPHYT_RS35845 0.58 -0.7
3,211 - BPHYT_RS35845 0.58 +0.8
3,260 - BPHYT_RS35845 0.62 -0.0
3,358 - BPHYT_RS35845 0.69 +1.8
3,358 - BPHYT_RS35845 0.69 -0.3
3,358 - BPHYT_RS35845 0.69 +1.3
3,358 - -0.0
3,361 + BPHYT_RS35845 0.69 -2.1
3,362 - BPHYT_RS35845 0.69 +1.6
3,362 - BPHYT_RS35845 0.69 -1.2
3,362 - BPHYT_RS35845 0.69 +7.0
3,362 - BPHYT_RS35845 0.69 -0.0
3,362 - BPHYT_RS35845 0.69 +2.0
3,362 - BPHYT_RS35845 0.69 -1.7
3,362 - BPHYT_RS35845 0.69 +5.2

Or see this region's nucleotide sequence