Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35550 and BPHYT_RS35555 overlap by 8 nucleotides BPHYT_RS35555 and BPHYT_RS35560 are separated by 88 nucleotides BPHYT_RS35560 and BPHYT_RS35565 are separated by 54 nucleotides BPHYT_RS35565 and BPHYT_RS35570 are separated by 410 nucleotides
BPHYT_RS35550: BPHYT_RS35550 - nitrile hydratase, at 3,573,370 to 3,574,041
_RS35550
BPHYT_RS35555: BPHYT_RS35555 - hypothetical protein, at 3,574,034 to 3,574,402
_RS35555
BPHYT_RS35560: BPHYT_RS35560 - endoribonuclease L-PSP, at 3,574,491 to 3,574,976
_RS35560
BPHYT_RS35565: BPHYT_RS35565 - activator of HSP90 ATPase, at 3,575,031 to 3,575,477
_RS35565
BPHYT_RS35570: BPHYT_RS35570 - hypothetical protein, at 3,575,888 to 3,576,139
_RS35570
Position (kb) 3574
3575 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3573.556 kb on + strand, within BPHYT_RS35550 at 3573.560 kb on + strand, within BPHYT_RS35550 at 3573.560 kb on + strand, within BPHYT_RS35550 at 3573.571 kb on + strand, within BPHYT_RS35550 at 3573.571 kb on + strand, within BPHYT_RS35550 at 3573.574 kb on + strand, within BPHYT_RS35550 at 3573.675 kb on + strand, within BPHYT_RS35550 at 3573.956 kb on + strand, within BPHYT_RS35550 at 3574.260 kb on - strand, within BPHYT_RS35555 at 3574.263 kb on - strand, within BPHYT_RS35555 at 3574.724 kb on - strand, within BPHYT_RS35560 at 3574.743 kb on - strand, within BPHYT_RS35560 at 3575.032 kb on + strand at 3575.095 kb on + strand, within BPHYT_RS35565 at 3575.096 kb on - strand, within BPHYT_RS35565 at 3575.264 kb on - strand, within BPHYT_RS35565 at 3575.336 kb on + strand, within BPHYT_RS35565 at 3575.391 kb on + strand, within BPHYT_RS35565 at 3575.512 kb on - strand at 3575.612 kb on + strand at 3575.635 kb on - strand at 3575.766 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 3,573,556 + BPHYT_RS35550 0.28 +0.0 3,573,560 + BPHYT_RS35550 0.28 -1.6 3,573,560 + BPHYT_RS35550 0.28 +1.2 3,573,571 + BPHYT_RS35550 0.30 -0.1 3,573,571 + BPHYT_RS35550 0.30 +0.1 3,573,574 + BPHYT_RS35550 0.30 +0.1 3,573,675 + BPHYT_RS35550 0.45 +0.1 3,573,956 + BPHYT_RS35550 0.87 -0.2 3,574,260 - BPHYT_RS35555 0.61 +1.9 3,574,263 - BPHYT_RS35555 0.62 -1.4 3,574,724 - BPHYT_RS35560 0.48 +0.3 3,574,743 - BPHYT_RS35560 0.52 +0.9 3,575,032 + +0.4 3,575,095 + BPHYT_RS35565 0.14 -2.1 3,575,096 - BPHYT_RS35565 0.15 +0.5 3,575,264 - BPHYT_RS35565 0.52 +1.1 3,575,336 + BPHYT_RS35565 0.68 -1.4 3,575,391 + BPHYT_RS35565 0.81 -0.8 3,575,512 - +1.5 3,575,612 + -0.2 3,575,635 - -0.4 3,575,766 + +0.7
Or see this region's nucleotide sequence