Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35400

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,540,934	+		BPHYT_RS35395	0.22	+0.3
3,540,934	+		BPHYT_RS35395	0.22	+0.3
3,540,935	-		BPHYT_RS35395	0.22	-1.9
3,541,327	+		BPHYT_RS35395	0.67	-0.8
3,541,617	+				-0.2
3,542,135	-		BPHYT_RS35400	0.31	-1.9
3,542,590	-		BPHYT_RS35400	0.58	-1.2
3,542,698	-		BPHYT_RS35400	0.65	-0.1
3,542,864	-		BPHYT_RS35400	0.75	+0.5
3,542,941	-		BPHYT_RS35400	0.80	-4.4
3,543,281	-				-0.4
3,543,460	+				-0.1
3,543,506	-				-0.1
3,543,751	-		BPHYT_RS35405	0.29	+0.3
3,543,777	-		BPHYT_RS35405	0.40	-0.2
3,543,953	+				-1.3
3,544,009	-				+0.4