Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35025

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,460,452	+		BPHYT_RS35015	0.28	+1.4
3,460,452	+		BPHYT_RS35015	0.28	-1.1
3,460,509	+		BPHYT_RS35015	0.40	-0.6
3,460,710	+		BPHYT_RS35015	0.84	+0.2
3,461,065	-		BPHYT_RS35020	0.25	-0.4
3,461,613	+		BPHYT_RS35025	0.19	+0.5
3,461,613	+		BPHYT_RS35025	0.19	-1.1
3,461,771	+		BPHYT_RS35025	0.33	-1.6
3,461,772	-				+0.3
3,462,057	+		BPHYT_RS35025	0.59	+0.6
3,462,270	-		BPHYT_RS35025	0.78	-0.4
3,462,310	-		BPHYT_RS35025	0.82	+0.9
3,462,356	+		BPHYT_RS35025	0.86	-1.7
3,462,687	+		BPHYT_RS35030	0.19	+0.4
3,462,716	-		BPHYT_RS35030	0.33	+0.4
3,462,716	-		BPHYT_RS35030	0.33	-1.3
3,462,763	+		BPHYT_RS35030	0.56	-0.1
3,462,764	-		BPHYT_RS35030	0.57	-0.7
3,462,820	-		BPHYT_RS35030	0.84	+1.1
3,462,828	+		BPHYT_RS35030	0.88	+0.3
3,462,829	-		BPHYT_RS35030	0.89	-0.9
3,462,851	+				-0.4
3,462,852	-				-0.4
3,462,852	-				-0.1
3,462,890	-				-0.1
3,463,341	+		BPHYT_RS35035	0.29	-0.7
3,463,341	+		BPHYT_RS35035	0.29	+0.6
3,463,352	-		BPHYT_RS35035	0.31	+0.3