Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34820

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,416,219	-				-0.7
3,416,237	+				-0.8
3,416,237	+				-0.7
3,416,237	+				-0.1
3,416,237	+				-0.4
3,416,237	+				-2.1
3,416,238	-				-2.0
3,416,254	+				-0.0
3,416,254	+				+0.9
3,416,255	-				+0.0
3,416,255	-				-1.0
3,416,305	+				-0.7
3,416,305	+				+0.5
3,416,306	-				+0.9
3,416,393	-				-0.8
3,416,400	+				-0.5
3,416,466	-				-0.5
3,416,466	-				-0.1
3,416,736	+		BPHYT_RS34815	0.45	-0.1
3,416,770	-		BPHYT_RS34815	0.50	-0.1
3,416,807	-		BPHYT_RS34815	0.56	-0.6
3,416,979	+		BPHYT_RS34815	0.85	+0.9
3,418,481	+		BPHYT_RS34825	0.13	-2.7
3,418,482	-		BPHYT_RS34825	0.13	-0.2
3,418,588	-		BPHYT_RS34825	0.24	-0.1
3,418,643	-		BPHYT_RS34825	0.30	-0.4
3,418,643	-				+0.9
3,418,723	-		BPHYT_RS34825	0.38	-0.9
3,418,827	+		BPHYT_RS34825	0.49	-0.1
3,418,828	-		BPHYT_RS34825	0.49	-1.1
3,418,828	-		BPHYT_RS34825	0.49	-0.6
3,418,828	-		BPHYT_RS34825	0.49	+0.8
3,418,981	-		BPHYT_RS34825	0.66	+0.1
3,418,981	-		BPHYT_RS34825	0.66	-0.3
3,419,205	+		BPHYT_RS34825	0.89	-1.8
3,419,205	+		BPHYT_RS34825	0.89	-0.7
3,419,206	-		BPHYT_RS34825	0.89	+0.5
3,419,206	-		BPHYT_RS34825	0.89	+1.8
3,419,206	-		BPHYT_RS34825	0.89	-0.7
3,419,206	-		BPHYT_RS34825	0.89	-0.7
3,419,228	+				-0.1
3,419,305	+				-1.5
3,419,306	-				+0.1